LOC120575023


Basic Information

Item Value
gene id LOC120575023
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5557625 ~ 5562390 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641942.1
CTGCACCCAGATATGGCGACAGGGCTTCATCCAACCTGAGGCAACAACAGAAAATGACTTCTAACCCGGGGTCACAACAACCAACAACCAACAACCAGCAGCCTGCAATGACTACAGGACAGACTCAATGAAGACGGTCTTGTATTTCTGGATGTGGTGCTGCAGCACCGTGTGTTTGTCCTTCCTGCCCTCTGATACCAGCTTGAGGTCCGCCTCCAATTCAGCACGCAGGTTTGGTTTGGACATCTCATAGCCCATGGAGTTGTAACCTAAACAAACGCGCATTTGATAAGTAACATATTTGAGTGAAAGGGGCAACGACAACATCTTTATGTATAAAACCTACTGTATATTGtggtatgtagtgtgtgtgtgtgtgtgtgtgtgtgcatacccTCCACCAGTCCCATGCCGAGCTCTCCAGGCAGAAACCTCTGGTCAGCTGTTAAGCCCACATACATGCGACTCTTTATGGTCTCGATGTGATCTGCATGGGTTGCATCTGTGCCTGTGATATACACCGTTCATACAGTACAGTTTGCATCAGACACAAAACAGTTAATCCTGAACAAACAACTATTCTATGTTGACTAGACAAAAGGGTCACTAAGTTGTTGCTAGGTTTGCTTTAAGTAAATGTTTATCTGCTTTAACTGAAGGGGTAGCCTGGCATCACCAATACTAATTTGCAAATGTGTATTAGTCTGGAAACTAAAATTAAGACCTTTTGTAGGAAGCATCAATATTTTATGAGGAACAACATACATTAAAAAcagtatcgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgcactgtACCAATGCCGTGTTTCTCCATCAGGGATATGAGGTCGGCTTCAGTGAGCAGCTGCGGAGGACTCGTTTGTCCATCCACCATCTCGATAGCAGAGGGCTGGAACTGGGAGCCTTGCTCATACACTGGGATCACCTAGCACACATACGAAGCAGGTTTACTGCACATATCACACACAAGCAGCACGGACCACACACAACGTACTTCATAAAAGCGAGCTGAACTCTACATTGTCCTCCCCCACCTCGTGCAGCactgagacaaagacagacatgaCAGAGGGGATGAAGTGGGGGGTGAGTATCAGTTTAAAACACAAATACTAttgatctgtgtgtctgtgcacggATGACTTTGTACCTTTGATCTTGTAGAAAGTCTCGGGTATGAAAGCCTGGATGGCTTTGAAGCGCTCCACAACAAAGCCCAGAgtgggaaactgaca

Function

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641942.1 True 1261 lncRNA 0.46 3 5557625 5562390

Neighbor

gene id symbol gene type direction distance location
ep300b LOC100700725 coding upstream 25363 5497950 ~ 5532262 (+)
xpnpep3 xpnpep3,LOC102784555 coding upstream 62037 5478106 ~ 5495588 (+)
trnaq-cug_13 NA coding upstream 95865 5461689 ~ 5461760 (+)
chadla chadl,LOC103370796 coding upstream 96362 5453643 ~ 5461263 (+)
rangap1a rangap1 coding upstream 104989 5438507 ~ 5452636 (+)
smcr8a smcr8,LOC102303222,LOC102212603,LOC102782846 coding downstream 6195 5568585 ~ 5578672 (+)
pdap1b pdap1,LOC102785718 coding downstream 20870 5583260 ~ 5587770 (+)
shmt1 shmt1,LOC106933460,LOC107104202 coding downstream 28074 5590464 ~ 5601974 (+)
cpsf4 cpsf4 coding downstream 40078 5602468 ~ 5610464 (+)
fscn1a fscn1 coding downstream 200594 5762984 ~ 5781780 (+)
G152115 NA non-coding upstream 88530 5466285 ~ 5469095 (+)
G152008 NA non-coding upstream 124499 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding upstream 128439 5428395 ~ 5429186 (+)
LOC120575483 NA non-coding upstream 195161 5361570 ~ 5362464 (+)
G152022 NA non-coding upstream 198789 5354830 ~ 5358836 (+)
G152148 NA non-coding downstream 71097 5633487 ~ 5633861 (+)
G152154 tnrc18,LOC102789128 non-coding downstream 110056 5672446 ~ 5673600 (+)
G152179 smurf1 non-coding downstream 231734 5794124 ~ 5830663 (+)
G152201 NA non-coding downstream 311374 5873764 ~ 5874303 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding downstream 437739 6000129 ~ 6002642 (+)
G152125 NA other upstream 7079 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 93322 5461939 ~ 5464303 (+)
G152028 aco2,LOC103370792 other upstream 179886 5370950 ~ 5377739 (+)
G152024 NA other upstream 196330 5359654 ~ 5361295 (+)
G151995 NA other upstream 337875 5215685 ~ 5219750 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other downstream 63817 5626207 ~ 5647190 (+)
G152149 actb,LOC107581721,LOC102799139 other downstream 163496 5725886 ~ 5771867 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other downstream 388034 5950424 ~ 5957317 (+)
dexi dexi,LOC107590611 other downstream 1707738 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1777595 7339985 ~ 7356838 (+)

Expression


Co-expression Network