LOC120575092 (pmm1)


Basic Information

Item Value
gene id LOC120575092
gene name pmm1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5333449 ~ 5347626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825699.1
ACACGTACAACTCGTCGTGTTTGTTGGTGCGAGCCGAACGGTTTCACTGAACCCGAGCTGAACCGAGCCGAGACAGCAGAATTGTAGACTGAAAGGTGAAGAAATAGAAGAAGTCAGCGTCTAACTAACTaagtctattttatttattttgatatttcAACTGACTGCTGAACACTCCTGATTCATTTCTGCCTGGCGTGAATGTGTATTTTTAGCTTACGTGTTTGCACGTGCGTGGACCTGTGACGCTTGCAATCAAAAGTCCAATTTGTAAACAATAATAACTCTTAAGAGAAAAGGAAATGGAGAAATCAAGCGGCTTCTCGCCGGACCGAAACATCCTCTGCCTGTTTGACGTGGACGGTACTTTGACACCACCTCGAGAGAAAATCGACCCACATTTGGACGAGTTTTTCCAGACTCTGCGGAGGAAAGTGAAGATCGGCATCGTGGGTGGGTCAGACTACTCCAAGATTGCTGAGCAGCTCGGAGAGGGGGATGATGTGATAAACAAGTTTGACTACGTATTTGCTGAGAACGGGACAGTGCAATATAAAGATGGGAAACTCCTCTCAAAGCATGCCATTCAGAACCAGATCGGGGAGGAGCTGCTGCAGGACCTGATCAACTTCTGCCTCAGCTACATGGGGCTCATCAAGCTGCCAAAGAAAAGGGGAACATTCATTGAGTTCAGGAATGGAATGCTCAACATTTCCCCCGTTGGTCGGAGCTGCACGCTGGAGGAGCGAATCGAATTCTCTGAAATCGACAAGagagagaagatCAGGGAGAAATTTGTTGCTGCCCTGAAGGAGAAGTTTGCTGGAAAGGGACTAAGGTTCACTAAAGGCGGTCTCATCAGCTTTGACGTTTTTCCAGAGGGCTGGGACAAGAGACTGTGTTTAGAGCTGCTGGACAGTGAAGGCCTGGACGCCATCTACTTCTTTGGCAACGAGACCTCAGATGGAGGAAACGACTATGAAATTTTCAACGACCCACGGACCATCGGTTTCACGGTCTACTCTCCAGAGGACACGGCCAGGTTCTGTCGGGAGCTTTTCTTCAACGCTCCGCCACACGAGCCCTGACGTCCTGGAACGCCCCCGCCCCCCGGTCCCTTTacagagaaaggcctctgacgTCCCGCCTGTGGCTCTCTGCTGGTACGATAACAAGCAACTCCAACCCAGGCTATTTACGAACTGCTGAAAGATACCACtactgattttctccataataTTAATATGATTACCCTGAATACAGTACAGTAGCAGGGTGATTTGACTAAATGTGTACAATAAATCCTGctgggatttatttatttgttattttaaaagggACAGAAACTGAGGAAGTGTTACACGTTGAAGTATGTGAAAGTTCTAAGTATTGTGCCAAATGTGCATGACTGCAGTGTCTCAACGCTGCGATGTGTAGCATGTAACATTAACCAAAAAGCTTAGAGAGATTCTGAAACATCAGTGTTGGAAGTTATCACTTCAGATTATTACAGTACAGAATTATGTTTTGCACTAATGTTGGCATAATTTCATACCAACTGTTGGTATATTATTGTTgaacagaaaagagagagagagtggttttaaaagagctgatttttgttttggtgaGTCCATATTGAAAATGAGATATGAATGAAGCAGTAAAGAAGATGTGGGTCTTTCATCCTCTACAGTTGAGGAGATATGAATCATTCCAGTTTTTTTATTGTCTCTGCAGCTGGATGTGGTTTGTTGTTTAGTCATTGTGTGATCCCTTGAATatcaaatgtgtgttttaaCCTCACAAAGCTGGTGGAAATGGAAGCCGCTCGCTTGCATTGCTTGTTTAGCATCTCTAGGTTCTTTAAATGCATTCAAGTAAAAAGAATTTATCAGTTTCGATTTAAAACTGAGCATTACTGACTCAATGAATTCATCTTAACCACGGAATTAAGCTACTGTGACAAAGTCAACTCTGCAAAGTTTTGTCAGTCAATATGAAAGCtttttatgtaaaatatttttacGAGCTAGATCATGGCCTGCACGCTGGGTGACTATATGTATTGAAGCTTATTGATTGGTTCCTTGTTGCTATCTCTCTTTAGATTCTTGCCGTTTTCAACAGCTGCTTAAGGGGTTacatatcattttaaaatgtaaacactGACACTTTGATTTTGCCCATAACACCCATTAACCCATGACGGGTTAATGTTCTGTCCTGTTATGGTTCAGAAAAATAATACCTCCTGCTGGGATCATTATTGTAAATATGAGGCTTTTGATGAATCGGATTCATCAGCTGCAGTTCTGTGTCCGACTGTAAACACTCCATCAACCTCAAAGACTAAAAGGATCATGTAGACGAGACTTCTATGCACAGCAGAAAATTTGCTTTTAATGTGTCACTGATGCTAACCGGTTAAGAGAttcatcttgttctttttcagTCATTTATGGATACAATTCATTGTAATAAACCCTTTTTGATATCATGTCACTGAC

Function

symbol description
pmm1 Predicted to enable metal ion binding activity and phosphomannomutase activity. Predicted to act upstream of or within GDP-mannose biosynthetic process. Predicted to be located in cytoplasm.

NR:

description
phosphomannomutase 1

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825699.1 True 2510 mRNA 0.42 8 5333449 5347626

Neighbor

gene id symbol gene type direction distance location
LOC120575090 NA coding upstream 23857 5303860 ~ 5309592 (+)
plbd1a plbd1 coding upstream 30375 5290118 ~ 5303074 (+)
trnar-ccu_4 NA coding upstream 43456 5289921 ~ 5289993 (+)
pick1 pick1 coding upstream 43698 5279647 ~ 5289751 (+)
cdc42ep1b NA coding upstream 146693 5172805 ~ 5186756 (+)
LOC120575346 tob2 coding downstream 38879 5386505 ~ 5395774 (+)
rangap1a rangap1 coding downstream 90881 5438507 ~ 5452636 (+)
chadla chadl,LOC103370796 coding downstream 106017 5453643 ~ 5461263 (+)
trnaq-cug_13 NA coding downstream 114063 5461689 ~ 5461760 (+)
xpnpep3 xpnpep3,LOC102784555 coding downstream 130480 5478106 ~ 5495588 (+)
G151828 srebf2 non-coding upstream 387502 4818335 ~ 4945947 (+)
G151851 srebf2 non-coding upstream 448127 4884684 ~ 4885322 (+)
G151845 NA non-coding upstream 466807 4864722 ~ 4866642 (+)
G151821 rrp7a,LOC107673310,LOC107591059,LOC107569875 non-coding upstream 539782 4791411 ~ 4793667 (+)
G151767 NA non-coding upstream 701448 4617915 ~ 4632001 (+)
G152022 NA non-coding downstream 7204 5354830 ~ 5358836 (+)
LOC120575483 NA non-coding downstream 13944 5361570 ~ 5362464 (+)
G152008 NA non-coding downstream 19434 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding downstream 80769 5428395 ~ 5429186 (+)
G152115 NA non-coding downstream 118659 5466285 ~ 5469095 (+)
G151995 NA other upstream 113699 5215685 ~ 5219750 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 338928 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 504440 4824253 ~ 4829009 (+)
fam234b fam234b,LOC104962864 other upstream 511335 4806074 ~ 4822114 (+)
fmc1 fmc1,LOC102794917 other upstream 567892 4762973 ~ 4765557 (+)
G152024 NA other downstream 12028 5359654 ~ 5361295 (+)
G152028 aco2,LOC103370792 other downstream 23324 5370950 ~ 5377739 (+)
rbx1 rbx1 other downstream 114313 5461939 ~ 5464303 (+)
G152125 NA other downstream 186230 5533856 ~ 5550546 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other downstream 278581 5626207 ~ 5647190 (+)

Expression


Co-expression Network