RNA id: XM_039825699.1


Basic Information

Item Value
RNA id XM_039825699.1
length 2510
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120575092
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5333449 ~ 5347626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACGTACAACTCGTCGTGTTTGTTGGTGCGAGCCGAACGGTTTCACTGAACCCGAGCTGAACCGAGCCGAGACAGCAGAATTGTAGACTGAAAGGTGAAGAAATAGAAGAAGTCAGCGTCTAACTAACTaagtctattttatttattttgatatttcAACTGACTGCTGAACACTCCTGATTCATTTCTGCCTGGCGTGAATGTGTATTTTTAGCTTACGTGTTTGCACGTGCGTGGACCTGTGACGCTTGCAATCAAAAGTCCAATTTGTAAACAATAATAACTCTTAAGAGAAAAGGAAATGGAGAAATCAAGCGGCTTCTCGCCGGACCGAAACATCCTCTGCCTGTTTGACGTGGACGGTACTTTGACACCACCTCGAGAGAAAATCGACCCACATTTGGACGAGTTTTTCCAGACTCTGCGGAGGAAAGTGAAGATCGGCATCGTGGGTGGGTCAGACTACTCCAAGATTGCTGAGCAGCTCGGAGAGGGGGATGATGTGATAAACAAGTTTGACTACGTATTTGCTGAGAACGGGACAGTGCAATATAAAGATGGGAAACTCCTCTCAAAGCATGCCATTCAGAACCAGATCGGGGAGGAGCTGCTGCAGGACCTGATCAACTTCTGCCTCAGCTACATGGGGCTCATCAAGCTGCCAAAGAAAAGGGGAACATTCATTGAGTTCAGGAATGGAATGCTCAACATTTCCCCCGTTGGTCGGAGCTGCACGCTGGAGGAGCGAATCGAATTCTCTGAAATCGACAAGagagagaagatCAGGGAGAAATTTGTTGCTGCCCTGAAGGAGAAGTTTGCTGGAAAGGGACTAAGGTTCACTAAAGGCGGTCTCATCAGCTTTGACGTTTTTCCAGAGGGCTGGGACAAGAGACTGTGTTTAGAGCTGCTGGACAGTGAAGGCCTGGACGCCATCTACTTCTTTGGCAACGAGACCTCAGATGGAGGAAACGACTATGAAATTTTCAACGACCCACGGACCATCGGTTTCACGGTCTACTCTCCAGAGGACACGGCCAGGTTCTGTCGGGAGCTTTTCTTCAACGCTCCGCCACACGAGCCCTGACGTCCTGGAACGCCCCCGCCCCCCGGTCCCTTTacagagaaaggcctctgacgTCCCGCCTGTGGCTCTCTGCTGGTACGATAACAAGCAACTCCAACCCAGGCTATTTACGAACTGCTGAAAGATACCACtactgattttctccataataTTAATATGATTACCCTGAATACAGTACAGTAGCAGGGTGATTTGACTAAATGTGTACAATAAATCCTGctgggatttatttatttgttattttaaaagggACAGAAACTGAGGAAGTGTTACACGTTGAAGTATGTGAAAGTTCTAAGTATTGTGCCAAATGTGCATGACTGCAGTGTCTCAACGCTGCGATGTGTAGCATGTAACATTAACCAAAAAGCTTAGAGAGATTCTGAAACATCAGTGTTGGAAGTTATCACTTCAGATTATTACAGTACAGAATTATGTTTTGCACTAATGTTGGCATAATTTCATACCAACTGTTGGTATATTATTGTTgaacagaaaagagagagagagtggttttaaaagagctgatttttgttttggtgaGTCCATATTGAAAATGAGATATGAATGAAGCAGTAAAGAAGATGTGGGTCTTTCATCCTCTACAGTTGAGGAGATATGAATCATTCCAGTTTTTTTATTGTCTCTGCAGCTGGATGTGGTTTGTTGTTTAGTCATTGTGTGATCCCTTGAATatcaaatgtgtgttttaaCCTCACAAAGCTGGTGGAAATGGAAGCCGCTCGCTTGCATTGCTTGTTTAGCATCTCTAGGTTCTTTAAATGCATTCAAGTAAAAAGAATTTATCAGTTTCGATTTAAAACTGAGCATTACTGACTCAATGAATTCATCTTAACCACGGAATTAAGCTACTGTGACAAAGTCAACTCTGCAAAGTTTTGTCAGTCAATATGAAAGCtttttatgtaaaatatttttacGAGCTAGATCATGGCCTGCACGCTGGGTGACTATATGTATTGAAGCTTATTGATTGGTTCCTTGTTGCTATCTCTCTTTAGATTCTTGCCGTTTTCAACAGCTGCTTAAGGGGTTacatatcattttaaaatgtaaacactGACACTTTGATTTTGCCCATAACACCCATTAACCCATGACGGGTTAATGTTCTGTCCTGTTATGGTTCAGAAAAATAATACCTCCTGCTGGGATCATTATTGTAAATATGAGGCTTTTGATGAATCGGATTCATCAGCTGCAGTTCTGTGTCCGACTGTAAACACTCCATCAACCTCAAAGACTAAAAGGATCATGTAGACGAGACTTCTATGCACAGCAGAAAATTTGCTTTTAATGTGTCACTGATGCTAACCGGTTAAGAGAttcatcttgttctttttcagTCATTTATGGATACAATTCATTGTAATAAACCCTTTTTGATATCATGTCACTGAC

Function

GO:

id name namespace
GO:0019307 mannose biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function

KEGG:

id description
K17497 PMM; phosphomannomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205708 lncRNA upstream 387502 4869752 ~ 4945947 (+) True G151828
TU205706 lncRNA upstream 440083 4869752 ~ 4893366 (+) False G151828
TU205739 lncRNA upstream 448127 4884684 ~ 4885322 (+) True G151851
TU205707 lncRNA upstream 457309 4818335 ~ 4876140 (+) False G151828
TU205967 lncRNA downstream 7204 5354830 ~ 5358836 (+) True G152022
TU205975 lncRNA downstream 13944 5361570 ~ 5362464 (+) True LOC120575483
XR_005641997.1 lncRNA downstream 14088 5361714 ~ 5362432 (+) False LOC120575483
TU205948 lncRNA downstream 19434 5367060 ~ 5433126 (+) True G152008
TU205996 lncRNA downstream 80769 5428395 ~ 5429186 (+) True G152040
XM_039825698.1 mRNA upstream 23857 5303860 ~ 5309592 (+) False LOC120575090
XM_039825697.1 mRNA upstream 23857 5305857 ~ 5309592 (+) True LOC120575090
XM_039825695.1 mRNA upstream 30375 5290118 ~ 5303074 (+) True plbd1a
XM_039825687.1 mRNA upstream 43698 5279647 ~ 5289751 (+) True pick1
XM_039825688.1 mRNA upstream 146693 5172805 ~ 5186756 (+) True cdc42ep1b
XM_039826065.1 mRNA downstream 38879 5386505 ~ 5395774 (+) True LOC120575346
XM_039824482.1 mRNA downstream 90881 5438507 ~ 5452636 (+) True rangap1a
XM_039824480.1 mRNA downstream 90881 5438507 ~ 5452636 (+) False rangap1a
XM_039824479.1 mRNA downstream 106017 5453643 ~ 5461263 (+) True chadla
XM_039824483.1 mRNA downstream 114313 5461939 ~ 5464302 (+) True rbx1
unassigned_transcript_717 other upstream 43456 5289921 ~ 5289993 (+) True trnar-ccu_4
TU205926 other upstream 113699 5215685 ~ 5219750 (+) True G151995
TU205771 other upstream 352343 4975717 ~ 4981106 (+) False LOC120575156
TU205710 other upstream 504440 4824253 ~ 4829009 (+) True G151830
XR_005641998.1 other upstream 528536 4804760 ~ 4804913 (+) True LOC120575507
TU205974 other downstream 12028 5359654 ~ 5361295 (+) True G152024
TU205981 other downstream 23324 5370950 ~ 5377739 (+) True G152028
unassigned_transcript_718 other downstream 114063 5461689 ~ 5461760 (+) True trnaq-cug_13
TU206083 other downstream 114339 5461965 ~ 5464303 (+) False rbx1
TU206111 other downstream 201665 5549291 ~ 5550546 (+) False G152125

Expression Profile