cdc42ep1b


Basic Information

Item Value
gene id cdc42ep1b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5172805 ~ 5186756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825688.1
ccatctccttCCACTCCACTTGTCAGCCGCAGCAGCCGCACAGAGCTGCTCCGCTGATGCCAAGTCCATGTCCAGAAGGAAACATACGGTGCGGAGCGCAAACCGACCAACCGggtgacagagaaaagaggcgGTGAAGTTGTTTCTCCGCGAAGGGACTTCTTTATTCTAAGCTGGCTTTAAGTGAACTGAATGAAAACACAGAAGGCCCTCTACCTGGAAACCATCGGGCCACTAAGTGGATTGAAGAAGGCAGAGAGCAAGTGAGGGAGGGAAGACAGAAGGGATTAGCAGCTAATCCAGTGCATGGACAATCCTGGATGAGCCTTATTTTTTCTTCCACGATGATGCAGACAAAAGAGTCGCTGGATTACTTCACACTACTTTATTGGCCTTTTTAAGAACGCTTCAGCCACCTTTTTCCTCTGCTCTGATTGTTTTCGTTGCCTCTCAAAGGTCTGGCGCCTTGGGTACAAAGGGGACCAAGGGAACTGAGGATAAAGACGCGGAGCGACAGGCCTGGTGACAGGATGTCCCATGGACAGTGTGGTGCCACACATGGATAAACGGCTTTAGTGGTAGACGGTGCATGGCAGTGGACCCCGAGCTCTCTCTGCTTGGACTTTGAGGAAGACAAGTTCATGAGACGCACACAATCCTCTCAAAAGTAGAGATCTATTGAAGGCTCCTGCAAAAAGGACTCGCTGCCATGGACCCTAAACTGGAATTCAAACTTGACTGACATGTTATCGGAGCTCAGACGCTCTCATTTAAATTAAAGGGAAATTACGCAACTTTCCAGTCAGAATGAGTCTGGGAAAACTGCCAGGGATCAAGGGCCTTGTGTCTGGCTCGCAGGGGAAACGTCGTTTCAAGAGCGAACTCTCTGTGGACATGATCAGCCCGCCGCTGGGTGACTTCCGACACACTATGCATGTTGGTCGTGGCGGGGAAGTGTTTGGTGACACTTCCTTCCTTAGCAACTACGGGGGCAACCGGGAACCAGGAAGTCCAGACTCAGCAAACAGCTCCAGGACGACCGGGTTCTTCACACGCACCTTTCGGCATGTACGGAAGAACTCTGGGCCGCGTCCGCGAGGGGGCTCCCGGGACTTGTCATCCACGCCACCAGATGTCTCACCCATCATCAAGAACGCCATCTCCCTGCCCCAGCTGAACATGGACTCCAATGGGTGCCTACAGAGGGTGCTGTTCCCCAGCTCCATCAGCTCGACAGATGACTCCTTCTGCACATATGGTCTACAGTCTGGATTTGTCACGCTGCCCCGCCTCTCTCGCATTGACAGACAGTTTTATGATGGAGACGTGCGGAAAGGGTCTCTACCCGACAGCGGTAGCTTCACGCTGACTCGCTCAGACTCCCTCATGTCGTTCACTGTAGACCTTGGCCCTTCCCTTATGAGTGAGGTGCTGAGCTTGATTGACAACCCCAGCTACCTTCAGACGTCCAATCACAGCCAGGCAGCAggcgaggaagaggaaggagaggaccACAGCTCTCTAACAGAGACGCCTGTGCAGAGCCCTGAGTTGACTTCACCCAACCCCTCCATGAGTAGCAGGTCATTCAGCAGTAACATGAACAACAGGGGGCGCTCTTGTAGCGTGGACTGGgcagagcaagaggaggagagggggtcACTGAGGACTCCAGATGTGTGCACTGGGTCTCCTCAGAGAGCGGAGCCGGCGATGGAGGCAGAACGGTTCCAGAGGGCGGCTGACGTGCTGTCTCGTCATTATGGGGGAGGCTCCTTCACAAAGGGAACCAGGATGGGCAACGACACCCCCTCTCCTGCTTTGTCCCAAAGCCGCAAAACACCATATGCCTTTtctgaagaggaggaagaggtcaAAGTCTAGATgttgaaaagtctttctgaaaGGAAGAAGGAACTTCATTGatttggtttggtttatttCGAGTCCGGGAGGCTGAACGTTGTGATATTCTGTTCTTCAATAGAAACATGCTTCCTCTTTCACATAAGGGACGTCAGTGATCAACTACCAGATCCTGGTCTGTATTCAGTTTCTGGaccttcccctctctctgcaCTATGTTGCTGCCATGATTTTATAGATTGTTTAAACTATTCTAAAGATAGGTCACTGAATGAGTCGGACACCACACAATGGATTCTTGTCAAGactaaatattaataattaccTTTGTTTTCATCagtaacaaaaatgtaaaagtgaatAACATTTGTCACACCTGCATTAATTGTCCTCATAACAGTTGAATGAA

Function

NR:

description
PREDICTED: cdc42 effector protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825688.1 True 2275 mRNA 0.51 4 5172805 5186756

Neighbor

gene id symbol gene type direction distance location
LOC120575079 LOC102199849 coding upstream 89904 5072706 ~ 5082901 (+)
sox10 sox10 coding upstream 120482 5043221 ~ 5052323 (+)
LOC120575072 kcnj4,LOC102800298 coding upstream 145034 5013499 ~ 5027771 (+)
LOC120573903 NA coding upstream 173806 4996204 ~ 4998999 (+)
LOC120575507 NA coding upstream 367892 4804760 ~ 4804913 (+)
pick1 pick1 coding downstream 92891 5279647 ~ 5289751 (+)
trnar-ccu_4 NA coding downstream 103165 5289921 ~ 5289993 (+)
plbd1a plbd1 coding downstream 103362 5290118 ~ 5303074 (+)
LOC120575090 NA coding downstream 117104 5303860 ~ 5309592 (+)
LOC120575092 pmm1 coding downstream 146693 5333449 ~ 5347626 (+)
G151828 srebf2 non-coding upstream 226858 4818335 ~ 4945947 (+)
G151851 srebf2 non-coding upstream 287483 4884684 ~ 4885322 (+)
G151845 NA non-coding upstream 306163 4864722 ~ 4866642 (+)
G151821 rrp7a,LOC107673310,LOC107591059,LOC107569875 non-coding upstream 379138 4791411 ~ 4793667 (+)
G151767 NA non-coding upstream 540804 4617915 ~ 4632001 (+)
G152022 NA non-coding downstream 168074 5354830 ~ 5358836 (+)
LOC120575483 NA non-coding downstream 174814 5361570 ~ 5362464 (+)
G152008 NA non-coding downstream 180304 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding downstream 241639 5428395 ~ 5429186 (+)
G152115 NA non-coding downstream 279529 5466285 ~ 5469095 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 178284 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 343796 4824253 ~ 4829009 (+)
fam234b fam234b,LOC104962864 other upstream 350691 4806074 ~ 4822114 (+)
fmc1 fmc1,LOC102794917 other upstream 407248 4762973 ~ 4765557 (+)
pde6hb LOC104937730 other upstream 703527 4400030 ~ 4469278 (+)
G151995 NA other downstream 28929 5215685 ~ 5219750 (+)
G152024 NA other downstream 172898 5359654 ~ 5361295 (+)
G152028 aco2,LOC103370792 other downstream 184194 5370950 ~ 5377739 (+)
rbx1 rbx1 other downstream 275183 5461939 ~ 5464303 (+)
G152125 NA other downstream 347100 5533856 ~ 5550546 (+)

Expression


Co-expression Network