LOC120575079 (LOC102199849)


Basic Information

Item Value
gene id LOC120575079
gene name LOC102199849
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5072706 ~ 5082901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825681.1
CCCTGCGTCCGTCGCGAGACCGACGCACATACATAAATCTCGCAGTGATGGCTGCGCCGCCCGATACTGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCACTGAACAGACACGAAGACTGGAGTAGCATCCACGCCTTCTGTGACCAGCTCAACAATGATTTGGAGGGACCTCAGCTGGCCACCAGGCTCCTGGCCCACAAGATCCAGTCCCCACAGGAGTGGGAGGCCATGCAGGCCCTGCTGGTTCTGGAGACGTGTATGAAAAACTGCGGGAAAAGGTTTCACAGTGAAGTGGGCAAGTTCCGTTTTCTCAATGAACTCATCAAAGTAGTTTCTCCAAAGTACCTGGGCTCCCGGTCACCAGAGCCAGTAAAAAAGAAGGTTTTGGAGTTGATCTTTAGCTGGACTTTGGGGTTACCCGAGGAGGCCAAGATCTCCGATGCCTATCAGATGCTGAAGAAACAAGGTATTATTAAACAAGACCCAGAGCTGCCACCTGACAAACTACTGAACCTTCCTCCACCCAGACCCAAGAATCCGATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGTCTCGCCTGTTGAATAGCTCGCACCCTGATGACCTTAAAGCTGCCAACAAACTCATTAAGGAAATGGTTCAAGAGGATCAGAAGCGAGCAGAGAAAGTGTCAAAGCGGGTGAACACCATTCAGGAGGTGAAGGAGAGCGTCACTTTGCTCTCTCAGCTTCTGCAGGACTACGACAGCAGCGCCGACAATCCCAGCAACGCCGAACTCTTACAGGACCTGTACCAGCGCTGTGAGAAAATGAGACCGACACTGTTCAGACTGGCAAGTGATACGGAGGACAACGACGAGGCTCTGGCTGAGATCCTGCAGGCCAACGACAGCCTGACTCACATCATCAACCAGTACAAACAGCAGGTGAAGGGGGAAATAGTAAACGGCAACAACACACTaaacgcacacaaacaaacagGAGGAGGGACGGCACTGCTAGATCTGTCCGGGTTGGACACATCGCCACAGTCGCCTCCGTCCTTCCCAGAGTTCCCCACTCCAACGGACAGCCTCAACGCCCCCTCGCAGGAGATGGGGATCAGTCTCCTCGACGACGAGCTCATGTCGCTCGGTTTAAGTGAAGGAACACACGCCTCCAACCCTCACTCCCAGCCTGAGGACTCCACAGCCTGGGACTCCTTCCagTCCTCCGACAGCATAGACGCAGACATCCCAGCAGCACCCAGTCTCCTCCTGAGTCCAGACCCGCCCTCCTACTCTCAGCCCCTCTCGTCTGGCTCCACCCCTGGGAACTCGGCCCTGGACGAGCTGGAACTGCTGGGAAAGACACTGATGCAGCAGTCCCTGCCCCCAGAGGGCCTGCAGGTCAAATGGGACAAGCAGCAGTGCAAACCAACTCTGCGAGATCTCCAGAGCAAGTCTGGCCACAACATTACCCCGAACCCCATCCCAACCTTCGCCGCTGAACATCCGCCACCTCTCCCCAACTGTCAGCCCAGCCCTGCAGTCACGTTGCTGGATATGTCCCCCACTCACAAGGACACTCCTTCTGCAGAAGTCACCCTGACTGATGTTTTTGTACCGCTAGAATCCATTAAGCCCAGTAGTCTGTTACCCGTGACCGTGTTTGACGGACACAGTCTGCGGGTTCTCTTTCACTTTGCACGCGACTCGCCTCCGTCTCGTCCCGATGTGCTGGTGGTGATCATCTCCATGCTGTCATCTGCTCCGGTCCCCGTCACGGACATAAACTTCCACACCACGGCTCCAAAGTCTATGGCAGTGAAGCTGCAGCCCCCATCAGGAACAGAGCTCCCAGCTTTCAACCCCATCCTTCCTCCTGCTGCTGTCACACAGATCCTGCTGCTGGCCAACCCAAACAAGGAGAAAGTGCAGCTGCAGTACAGACTAACCTTCACCATGGGAGAGCAGGAGCACAGCGAGAGCGGCAGTCTAGAACAGTTTCCCCCTCCAGAGACGTGGGGGAGCCTATAGCATTTAAAACCCAACCCCAACCTGACAGACTCTCGCTTTCAGGCTCCGCTTCCTCCCTAAACCGACTCTCCGACTCAACGAGCTGCATACGCCcggtttccttttttaaaccCATTGTACTTTCTTTAATTGCTACCGATTCTTTTCCTTGGATTCCGCTCATGCTCAGTCACTGTAACGTGTGTATGCTTTGCTCTAAATGAATCACGCGTGTCTAGGTCTAGTCCGCTGTACGTGGCtgcttttaaaacaaacatgcaacGCCGCTTTCCCATCGCTGTTGCAGTCTTTTcatattgttttcttttcatattgACAGTGCTacgggaaaaaaaagaagaaaactatATCAAAAGTGTGCATATTTTGCTCTTCTGGTGCGAGTTTGAATCGATTATCAGTTGCGTTTACCCTCACCTCTGCATGCTCTTTCAACATGGGACACAATGCTCGCGAAATCCAGCCCACCAAAAGAGAGAGGACataagcaacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: ADP-ribosylation factor-binding protein GGA1-like

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825681.1 True 2543 mRNA 0.53 18 5072706 5082901

Neighbor

gene id symbol gene type direction distance location
sox10 sox10 coding upstream 20383 5043221 ~ 5052323 (+)
LOC120575072 kcnj4,LOC102800298 coding upstream 44935 5013499 ~ 5027771 (+)
LOC120573903 NA coding upstream 73707 4996204 ~ 4998999 (+)
LOC120575507 NA coding upstream 267793 4804760 ~ 4804913 (+)
LOC120574165 NA coding upstream 283177 4785421 ~ 4789529 (+)
cdc42ep1b NA coding downstream 89904 5172805 ~ 5186756 (+)
pick1 pick1 coding downstream 196746 5279647 ~ 5289751 (+)
trnar-ccu_4 NA coding downstream 207020 5289921 ~ 5289993 (+)
plbd1a plbd1 coding downstream 207217 5290118 ~ 5303074 (+)
LOC120575090 NA coding downstream 220959 5303860 ~ 5309592 (+)
G151828 srebf2 non-coding upstream 126759 4818335 ~ 4945947 (+)
G151851 srebf2 non-coding upstream 187384 4884684 ~ 4885322 (+)
G151845 NA non-coding upstream 206064 4864722 ~ 4866642 (+)
G151821 rrp7a,LOC107673310,LOC107591059,LOC107569875 non-coding upstream 279039 4791411 ~ 4793667 (+)
G151767 NA non-coding upstream 440705 4617915 ~ 4632001 (+)
G152022 NA non-coding downstream 271929 5354830 ~ 5358836 (+)
LOC120575483 NA non-coding downstream 278669 5361570 ~ 5362464 (+)
G152008 NA non-coding downstream 284159 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding downstream 345494 5428395 ~ 5429186 (+)
G152115 NA non-coding downstream 383384 5466285 ~ 5469095 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 78185 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 243697 4824253 ~ 4829009 (+)
fam234b fam234b,LOC104962864 other upstream 250592 4806074 ~ 4822114 (+)
fmc1 fmc1,LOC102794917 other upstream 307149 4762973 ~ 4765557 (+)
pde6hb LOC104937730 other upstream 603428 4400030 ~ 4469278 (+)
G151995 NA other downstream 132784 5215685 ~ 5219750 (+)
G152024 NA other downstream 276753 5359654 ~ 5361295 (+)
G152028 aco2,LOC103370792 other downstream 288049 5370950 ~ 5377739 (+)
rbx1 rbx1 other downstream 379038 5461939 ~ 5464303 (+)
G152125 NA other downstream 450955 5533856 ~ 5550546 (+)

Expression


Co-expression Network