RNA id: XM_039825688.1


Basic Information

Item Value
RNA id XM_039825688.1
length 2275
RNA type mRNA
GC content 0.51
exon number 4
gene id cdc42ep1b
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5172805 ~ 5186756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccatctccttCCACTCCACTTGTCAGCCGCAGCAGCCGCACAGAGCTGCTCCGCTGATGCCAAGTCCATGTCCAGAAGGAAACATACGGTGCGGAGCGCAAACCGACCAACCGggtgacagagaaaagaggcgGTGAAGTTGTTTCTCCGCGAAGGGACTTCTTTATTCTAAGCTGGCTTTAAGTGAACTGAATGAAAACACAGAAGGCCCTCTACCTGGAAACCATCGGGCCACTAAGTGGATTGAAGAAGGCAGAGAGCAAGTGAGGGAGGGAAGACAGAAGGGATTAGCAGCTAATCCAGTGCATGGACAATCCTGGATGAGCCTTATTTTTTCTTCCACGATGATGCAGACAAAAGAGTCGCTGGATTACTTCACACTACTTTATTGGCCTTTTTAAGAACGCTTCAGCCACCTTTTTCCTCTGCTCTGATTGTTTTCGTTGCCTCTCAAAGGTCTGGCGCCTTGGGTACAAAGGGGACCAAGGGAACTGAGGATAAAGACGCGGAGCGACAGGCCTGGTGACAGGATGTCCCATGGACAGTGTGGTGCCACACATGGATAAACGGCTTTAGTGGTAGACGGTGCATGGCAGTGGACCCCGAGCTCTCTCTGCTTGGACTTTGAGGAAGACAAGTTCATGAGACGCACACAATCCTCTCAAAAGTAGAGATCTATTGAAGGCTCCTGCAAAAAGGACTCGCTGCCATGGACCCTAAACTGGAATTCAAACTTGACTGACATGTTATCGGAGCTCAGACGCTCTCATTTAAATTAAAGGGAAATTACGCAACTTTCCAGTCAGAATGAGTCTGGGAAAACTGCCAGGGATCAAGGGCCTTGTGTCTGGCTCGCAGGGGAAACGTCGTTTCAAGAGCGAACTCTCTGTGGACATGATCAGCCCGCCGCTGGGTGACTTCCGACACACTATGCATGTTGGTCGTGGCGGGGAAGTGTTTGGTGACACTTCCTTCCTTAGCAACTACGGGGGCAACCGGGAACCAGGAAGTCCAGACTCAGCAAACAGCTCCAGGACGACCGGGTTCTTCACACGCACCTTTCGGCATGTACGGAAGAACTCTGGGCCGCGTCCGCGAGGGGGCTCCCGGGACTTGTCATCCACGCCACCAGATGTCTCACCCATCATCAAGAACGCCATCTCCCTGCCCCAGCTGAACATGGACTCCAATGGGTGCCTACAGAGGGTGCTGTTCCCCAGCTCCATCAGCTCGACAGATGACTCCTTCTGCACATATGGTCTACAGTCTGGATTTGTCACGCTGCCCCGCCTCTCTCGCATTGACAGACAGTTTTATGATGGAGACGTGCGGAAAGGGTCTCTACCCGACAGCGGTAGCTTCACGCTGACTCGCTCAGACTCCCTCATGTCGTTCACTGTAGACCTTGGCCCTTCCCTTATGAGTGAGGTGCTGAGCTTGATTGACAACCCCAGCTACCTTCAGACGTCCAATCACAGCCAGGCAGCAggcgaggaagaggaaggagaggaccACAGCTCTCTAACAGAGACGCCTGTGCAGAGCCCTGAGTTGACTTCACCCAACCCCTCCATGAGTAGCAGGTCATTCAGCAGTAACATGAACAACAGGGGGCGCTCTTGTAGCGTGGACTGGgcagagcaagaggaggagagggggtcACTGAGGACTCCAGATGTGTGCACTGGGTCTCCTCAGAGAGCGGAGCCGGCGATGGAGGCAGAACGGTTCCAGAGGGCGGCTGACGTGCTGTCTCGTCATTATGGGGGAGGCTCCTTCACAAAGGGAACCAGGATGGGCAACGACACCCCCTCTCCTGCTTTGTCCCAAAGCCGCAAAACACCATATGCCTTTtctgaagaggaggaagaggtcaAAGTCTAGATgttgaaaagtctttctgaaaGGAAGAAGGAACTTCATTGatttggtttggtttatttCGAGTCCGGGAGGCTGAACGTTGTGATATTCTGTTCTTCAATAGAAACATGCTTCCTCTTTCACATAAGGGACGTCAGTGATCAACTACCAGATCCTGGTCTGTATTCAGTTTCTGGaccttcccctctctctgcaCTATGTTGCTGCCATGATTTTATAGATTGTTTAAACTATTCTAAAGATAGGTCACTGAATGAGTCGGACACCACACAATGGATTCTTGTCAAGactaaatattaataattaccTTTGTTTTCATCagtaacaaaaatgtaaaagtgaatAACATTTGTCACACCTGCATTAATTGTCCTCATAACAGTTGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205708 lncRNA upstream 226858 4869752 ~ 4945947 (+) True G151828
TU205706 lncRNA upstream 279439 4869752 ~ 4893366 (+) False G151828
TU205739 lncRNA upstream 287483 4884684 ~ 4885322 (+) True G151851
TU205707 lncRNA upstream 296665 4818335 ~ 4876140 (+) False G151828
TU205967 lncRNA downstream 168074 5354830 ~ 5358836 (+) True G152022
TU205975 lncRNA downstream 174814 5361570 ~ 5362464 (+) True LOC120575483
XR_005641997.1 lncRNA downstream 174958 5361714 ~ 5362432 (+) False LOC120575483
TU205948 lncRNA downstream 180304 5367060 ~ 5433126 (+) True G152008
TU205996 lncRNA downstream 241639 5428395 ~ 5429186 (+) True G152040
XM_039825681.1 mRNA upstream 89904 5072706 ~ 5082901 (+) True LOC120575079
XM_039825672.1 mRNA upstream 120482 5043221 ~ 5052323 (+) False sox10
XM_039825675.1 mRNA upstream 120482 5043233 ~ 5052323 (+) False sox10
XM_039825674.1 mRNA upstream 120482 5043347 ~ 5052323 (+) False sox10
XM_039825673.1 mRNA upstream 120482 5043519 ~ 5052323 (+) True sox10
XM_039825687.1 mRNA downstream 92891 5279647 ~ 5289751 (+) True pick1
XM_039825695.1 mRNA downstream 103362 5290118 ~ 5303074 (+) True plbd1a
XM_039825698.1 mRNA downstream 117104 5303860 ~ 5309592 (+) False LOC120575090
XM_039825697.1 mRNA downstream 119101 5305857 ~ 5309592 (+) True LOC120575090
XM_039825699.1 mRNA downstream 146693 5333449 ~ 5347626 (+) True LOC120575092
TU205771 other upstream 191699 4975717 ~ 4981106 (+) False LOC120575156
TU205710 other upstream 343796 4824253 ~ 4829009 (+) True G151830
XR_005641998.1 other upstream 367892 4804760 ~ 4804913 (+) True LOC120575507
TU205680 other upstream 407257 4762986 ~ 4765548 (+) False fmc1
TU205566 other upstream 703527 4400030 ~ 4469278 (+) False pde6hb
TU205926 other downstream 28929 5215685 ~ 5219750 (+) True G151995
unassigned_transcript_717 other downstream 103165 5289921 ~ 5289993 (+) True trnar-ccu_4
TU205974 other downstream 172898 5359654 ~ 5361295 (+) True G152024
TU205981 other downstream 184194 5370950 ~ 5377739 (+) True G152028
unassigned_transcript_718 other downstream 274933 5461689 ~ 5461760 (+) True trnaq-cug_13

Expression Profile