RNA id: XM_039825698.1


Basic Information

Item Value
RNA id XM_039825698.1
length 1185
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120575090
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5303860 ~ 5309592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacgtgaatggtgacgttttcactcggaaaaacgtttttccgatgtccatgaacgcacggtgaGTCTCTACCTCTACGCTGACCGGATGGTAGAAGAAAACCGGATTTCCGTGTGATATGTTATCCTGTGATTCTCGGGATTACCGTGCAAGtttgtgtcATAAACATAAGTTTAGCAGAGGGTATCACAGCAGCAGGTCTCcacattgctgcagccatgggcagaggggactgtcctgctggcactAAGTGGGACAACCTCGTTGGTATATGTTATAAGAGCCATACCGTAACCATACCCGAACCTAAAACTGAATCTGAACCTAAACCACCAACGGAGCCGCCGCTGAGAACCACGGCCCCCGCTGCCCAGGCCAGCTCACTGATGCTGCTGAGTCCGGCtctgtgggtctgtgtgggGCTGGTCTTTCTGGGGTCCGTCTTGGCTCTGGCTCTCTGGTTATTCATATACAAACGACACACCAGGCACAGCCACACCTCGGagGATGCAGAACAGTGTCAGAGGCCTCTTCAGAAAGCAGAGCCACCTGCCAAAATCCACCCACCGCCTCCACAGACAAACGGTCAGGCCGAGATGTTGCAGGGAGCAGCATGGGCCCCTTCTCTCTGTCCTCACCAGCACCTGGGGGCCCAGACAGGCTCAAAGTGGGAGGAGGGCTTCACCGCTTGCAGTGACCTTGCAAAGCATGTTGGGACAGAATGGGGCAGAGGGCAAATGAGGGAACACAGGGTCCCACTTCCTGCCACAGAGCTGGGTGGCACCGCGTTGGTTACAACTAAaactgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctttctTCACTGCATGAACTCTGTGAACTGTGTGGTGAGTTTTCCCCCAATGTTAAATCCAATTTTTTGGATATATTGCTTTTCTACTCTTttctactcttttttttttactgctgttTTATTTCACTGTAAGTGTCATGGTGTAAGTTGGTGTCCAATAATACCATGTAAGACTGTTTATGATATTGTgtacatgattaaaaaaaaaaaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205708 lncRNA upstream 357913 4869752 ~ 4945947 (+) True G151828
TU205706 lncRNA upstream 410494 4869752 ~ 4893366 (+) False G151828
TU205739 lncRNA upstream 418538 4884684 ~ 4885322 (+) True G151851
TU205707 lncRNA upstream 427720 4818335 ~ 4876140 (+) False G151828
TU205967 lncRNA downstream 45238 5354830 ~ 5358836 (+) True G152022
TU205975 lncRNA downstream 51978 5361570 ~ 5362464 (+) True LOC120575483
XR_005641997.1 lncRNA downstream 52122 5361714 ~ 5362432 (+) False LOC120575483
TU205948 lncRNA downstream 57468 5367060 ~ 5433126 (+) True G152008
TU205996 lncRNA downstream 118803 5428395 ~ 5429186 (+) True G152040
XM_039825695.1 mRNA upstream 786 5290118 ~ 5303074 (+) True plbd1a
XM_039825687.1 mRNA upstream 14109 5279647 ~ 5289751 (+) True pick1
XM_039825688.1 mRNA upstream 117104 5172805 ~ 5186756 (+) True cdc42ep1b
XM_039825681.1 mRNA upstream 220959 5072706 ~ 5082901 (+) True LOC120575079
XM_039825674.1 mRNA upstream 251537 5043347 ~ 5052323 (+) False sox10
XM_039825699.1 mRNA downstream 23857 5333449 ~ 5347626 (+) True LOC120575092
XM_039826065.1 mRNA downstream 76913 5386505 ~ 5395774 (+) True LOC120575346
XM_039824482.1 mRNA downstream 128915 5438507 ~ 5452636 (+) True rangap1a
XM_039824480.1 mRNA downstream 128915 5438507 ~ 5452636 (+) False rangap1a
XM_039824479.1 mRNA downstream 144051 5453643 ~ 5461263 (+) True chadla
unassigned_transcript_717 other upstream 13867 5289921 ~ 5289993 (+) True trnar-ccu_4
TU205926 other upstream 84110 5215685 ~ 5219750 (+) True G151995
TU205771 other upstream 322754 4975717 ~ 4981106 (+) False LOC120575156
TU205710 other upstream 474851 4824253 ~ 4829009 (+) True G151830
XR_005641998.1 other upstream 498947 4804760 ~ 4804913 (+) True LOC120575507
TU205974 other downstream 50062 5359654 ~ 5361295 (+) True G152024
TU205981 other downstream 61358 5370950 ~ 5377739 (+) True G152028
unassigned_transcript_718 other downstream 152097 5461689 ~ 5461760 (+) True trnaq-cug_13
TU206083 other downstream 152373 5461965 ~ 5464303 (+) False rbx1
TU206111 other downstream 239699 5549291 ~ 5550546 (+) False G152125

Expression Profile