RNA id: XM_039825794.1


Basic Information

Item Value
RNA id XM_039825794.1
length 1945
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120575146
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4518693 ~ 4526266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGTGGACTTAAAAAGAGGGCTGGGTAAAAGTGGGCGGACGGGTAGTTCCTAGTGTTTGTGCATTTAGACTCCGAGTCTGAAATTAGTGATCTTGAGAGCAGAAGGAATTAGACCTGAAAAGAGACACACAGCCTTCAAACAcatcGTCATCATGCTGATTCTCCTCGCTGGCATCTTTCTCCTTCACATTATAGGCATCGTCCTCCTCCTGGTGGCCACCATTGACAATGCCTGGTGGGTGACTGAAACGGTGTCCACTGATGTGTGGGCCCGGTGGCTACTTCAAAACGGAGTGTGGAACTACACCGCCCTTCCCACAGGTTCATTCTACCCAGAGGATTACCTCCAGGCAGTGCAGGCCAGCTCAGTGCTGGCGTGTATATTCTCCGGCCTGGGCATCTTTGTGTTCCTGGCTCAGCTCTTCACCCTCCAGAAAGGACAGAGGTTCACCATCTCCGGCGTCTTTCAGCTCCTCGCCTgtcTGTGCATCATGATCGCAGCCTCCATCTACACAGACCgctttcacctcgacgagagtTCTGGCTGGTATGGTCACTGCTACATCCTGGCGTGGACCTCCTTCGCTATTACGTTCATCTCCTCCATCATTTACTTTGTGCTACGCAAGAAGACAGCGTGAGACGGACACTAGAGCTATCCAAACCAGCCCCAAACCCTTTGGCTGGATCTACTCTTTCAGCTGAAATCTGGTTTTTAGTCACGGATGGCGTAAACAGTGTTTATACCATACCAGATTTGTGCTGCTAGTGTATATTCAGCTACAGATAGAACCTGTTGATCCTCTCAAATATGTACCAGTGTTTGATTGAGTCTGCTGTCAGATAGTCAGGGTTTCACACTTTTAGGCTATGTTCATTCTTGGcgtctttttttaaaaggtgcCAGCGTCTGTTTTACATTTGAATCCTACGGAGTAAACTGTGTTTTCAAAAAAGTCCTGAGTGCTTTTTTAAACGCCActgttgactttttttctacagcTCAGGGCATCTTTtggaagttgaaaaaaaaaaaaaactacgtCAAGCGCTTTTTTGACAGCCGACCAATGACAAGCGGAGTAGCCAGACCAAGAAAAAATGGAGTCGGAGCACAGCGAGTTATATGATATGACCGGGTGCTCCCTGTACAGGGAActcgctttgttttatctaacgtcagtagcaccgctctctctctctctctctctctctctctctctctctgttctttctctagctcgctccgcCACTTtgtttatctaacgttagcaccgctcCACATAGCGCTCTAAGATACGttagcagtagctgttgttaaagcaacaaaagacacacacactttttggaaccaaaatgctgccagcttctttttttcaaaaaagacGCTAAGTGTGAACATAGCTTAGGAGTGTTTGGGATATTTCGGCAGTAAAAGGCAAGCTCAATCAATCACAGTTGTATTTGAGTGTATTTTCAACCCAGAGTTTGGGCTGGATTTCCAAGGATTAagaatatttttgttattaacTGAACAGATTTTGCCTGACGATATAAAATGCTCTGATAAATTAAGATCTATCAATATTTCCGCTATTTTAACAGTAAAATCTGtggcctttttttcttttgtaatgtACATTTACATATGGATATTTAGTGTTGGATAAAATGGGCAGAGTTTAtgattttagtttatttttttattttttgtccttGTTATTTTATTCATGGATTTTATTTGATGTATCTGCTCTGGTTTTAACATCTTTTAATGCACCGCTAATCAAACAGAGTGTCACTACAATGTGATGGCATCGATCGGCAAAGCTGTGCAAGtttaaagtcttaaaaaaaaaacattcatatgTCAGCTGTTACAGATTTGTGTGTGATCTAATGAGAATATGTGATGACGTAAAATATAAAATCAGTAAAATAATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205590 lncRNA upstream 3243 4464468 ~ 4515450 (+) True G151746
TU205598 lncRNA upstream 17682 4498570 ~ 4501011 (+) True G151752
TU205586 lncRNA upstream 80493 4436863 ~ 4438200 (+) True G151743
TU205554 lncRNA upstream 151345 4365234 ~ 4367348 (+) True G151719
TU205545 lncRNA upstream 170872 4347618 ~ 4347821 (+) True G151711
TU205614 lncRNA downstream 91649 4617915 ~ 4632001 (+) True G151767
TU205691 lncRNA downstream 265145 4791411 ~ 4793667 (+) True G151821
TU205707 lncRNA downstream 292069 4818335 ~ 4876140 (+) False G151828
TU205704 lncRNA downstream 292650 4818916 ~ 4822102 (+) False fam234b
TU205733 lncRNA downstream 338456 4864722 ~ 4866642 (+) True G151845
XM_039824500.1 mRNA upstream 25147 4476168 ~ 4493546 (+) True zgc:65811
XM_039824499.1 mRNA upstream 27314 4476168 ~ 4491379 (+) False zgc:65811
XM_039826276.1 mRNA upstream 105519 4406863 ~ 4413174 (+) True LOC120575467
XM_039826266.1 mRNA upstream 115146 4400041 ~ 4403547 (+) False pde6hb
XM_039824379.1 mRNA upstream 172288 4338082 ~ 4346405 (+) False LOC120574173
XM_039824148.1 mRNA downstream 236707 4762973 ~ 4765557 (+) True fmc1
XM_039824149.1 mRNA downstream 241735 4768001 ~ 4775748 (+) True LOC120574083
XM_039824367.1 mRNA downstream 259155 4785421 ~ 4789529 (+) True LOC120574165
XM_039824370.1 mRNA downstream 279808 4806074 ~ 4822114 (+) True fam234b
XM_039824371.1 mRNA downstream 279808 4806074 ~ 4822114 (+) False fam234b
TU205566 other upstream 49415 4400030 ~ 4469278 (+) False pde6hb
TU205565 other upstream 62948 4400030 ~ 4455745 (+) False pde6hb
TU205564 other upstream 114831 4400030 ~ 4403862 (+) True pde6hb
XR_005641832.1 other upstream 172288 4338094 ~ 4346405 (+) False LOC120574173
TU205526 other upstream 199195 4318173 ~ 4319498 (+) True G151695
TU205680 other downstream 236720 4762986 ~ 4765548 (+) False fmc1
XR_005641998.1 other downstream 278494 4804760 ~ 4804913 (+) True LOC120575507
TU205710 other downstream 297987 4824253 ~ 4829009 (+) True G151830
TU205771 other downstream 449451 4975717 ~ 4981106 (+) False LOC120575156
TU205926 other downstream 689419 5215685 ~ 5219750 (+) True G151995

Expression Profile