RNA id: XM_039823817.1


Basic Information

Item Value
RNA id XM_039823817.1
length 1634
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC120573903
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4996204 ~ 4998999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTCAGGTACTAGAATAAAACTGATCAGGTTTGTGATTATCACAAGTAACAACAGTTACATCAGCATTGGTGGTCGCTGTAATAGTGAAGAGACGTTTTAACAACAGTGTTTATGATATGGTGGTCTTCCCCGCATCCTGACTCTAAGCTTAGGGGTTAGGGGTGGACAGCACCGCGGTGGGCCGTGGCAGTGTGGAGCGCCTCTCTGCTCGCCCGTGGACTGCAGCTGCTCTGATGCGATGCTCTCTGCGGGGtgtaaatgacaataaaaagcaAGGAAACATCTAAATCACAGCGGGAACATACGGAAACCGTCTCCTGTTATTTCCGGACACCCAAAAACCCGGCAGGTCCGAAGGCTCTATTGTAGTTTCTCTGTTAGGATGTCGTCATCTGAAAATGCTGCGTCACATAAAGTCTGTGACGCATCACCCCCAACATCAGAGGCTGAACCCCTGAGGATGGTCCTGTTGGGGAGGACAGGAACAGGCAGAAGCTCCGCAGGCAACACCATCCTGGGCAGGTCTGCCTTCTGGGTCAGCGTCTCCCCCTGCTCCGTCACCACACAGTGCACGAGACAGACTGGGACGGTAGACGGGCGCCAAGTCTCCGTGATTGACACTCCGGGATTCTTGCACACACGCCTGAACCCCGAGGAAGTCATGGCAGAGGTGGGGCGGTGCGTTGTCCTGTCCTCTCCGGGACCCCACGTCTTTCTGGTGACCCTGCAGCCCGGCAGGTTCACCCAGGAGGAGAGGGATGCCTTGGAGTGGATCAAGGCCACGTTTGGACCTGAAGCGACCAGGTTCACCATGGTGTTGTTCACCTGGGGAGAACGGCTGCAGGGCAAACGCATCGAGGACTTCCTGGGGGAGAGCGGCGAGCTGTCGGAGTTTGTCAGCAGCTGCCGTGGCGGGTATCACGTCTTTGCTAACAGTGGACGGGACGAGACAGCGGACAGCTCGCCACAGGTCGTCCAGCTCCTGAAGAAGATAGACAAGACTGTGGCGGAAAATGGAGGCAGTTGCTATAGCAGCGAGATGCTCAAGGATGCTGAGCAGGCCATCAGGGAGGCGCGAGAGAGGATGCTGGGAGAAAGAGGACACAACCTGTCCCCACAGAAGGTGGCTAAAGACAAAGAGGAGCAGAGACCAGAGTTTgagaggatgaggagggaggaagaggaggcccgGAAACGGGCGGAGAGGCTTTTCTGGTGCGAGCTGGTGACTGCGGTGGGGAAAGGCGCTGCAGAGGGGGCAGGGATCATGGTGAAGGATGAGGGGAAAGGGAAGGCCGTGACGAAGGTGAAGGTGATGGAGAGGGCAGCAGCTCTGGCAGCATCGCCGCTCTCCATCACTTCAGCTGCAAAAGCGGTGGGGGGAGCAGTGAGGGAAGGAAGCAAGGTGTTATATAAACACAGAAAAACGTTCCTGAAAACACCTCACTGAACACAGTCCGAGTCCAGTGTCCCTCAGCGCAGTAAACACAGGCCCAATGGAGCCTACGGTCAACGGAGAGGTGAGAGAAAAAGTCACTTAGCTGTACAGCCGCAAAGATTCATCTATCAATCAGCTTGTTGTcaacggtaacactttacaataaggtacacaaaaaaataggtagttactg

Function

GO:

id name namespace
GO:0017080 sodium channel regulator activity molecular_function
GO:0016247 channel regulator activity molecular_function

KEGG:

id description
ko04726 Serotonergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205708 lncRNA upstream 50257 4869752 ~ 4945947 (+) True G151828
TU205706 lncRNA upstream 102838 4869752 ~ 4893366 (+) False G151828
TU205739 lncRNA upstream 110882 4884684 ~ 4885322 (+) True G151851
TU205707 lncRNA upstream 120064 4818335 ~ 4876140 (+) False G151828
TU205967 lncRNA downstream 355831 5354830 ~ 5358836 (+) True G152022
TU205975 lncRNA downstream 362571 5361570 ~ 5362464 (+) True LOC120575483
XR_005641997.1 lncRNA downstream 362715 5361714 ~ 5362432 (+) False LOC120575483
TU205948 lncRNA downstream 368061 5367060 ~ 5433126 (+) True G152008
TU205996 lncRNA downstream 429396 5428395 ~ 5429186 (+) True G152040
XM_039825805.1 mRNA upstream 1683 4975701 ~ 4994521 (+) True LOC120575156
XM_039824370.1 mRNA upstream 174090 4806074 ~ 4822114 (+) True fam234b
XM_039824371.1 mRNA upstream 174090 4806074 ~ 4822114 (+) False fam234b
XM_039824367.1 mRNA upstream 206675 4785421 ~ 4789529 (+) True LOC120574165
XM_039824149.1 mRNA upstream 220456 4768001 ~ 4775748 (+) True LOC120574083
XM_039825671.1 mRNA downstream 14500 5013499 ~ 5027771 (+) True LOC120575072
XM_039825672.1 mRNA downstream 44222 5043221 ~ 5052323 (+) False sox10
XM_039825675.1 mRNA downstream 44234 5043233 ~ 5052323 (+) False sox10
XM_039825674.1 mRNA downstream 44348 5043347 ~ 5052323 (+) False sox10
XM_039825673.1 mRNA downstream 44520 5043519 ~ 5052323 (+) True sox10
TU205771 other upstream 15098 4975717 ~ 4981106 (+) False LOC120575156
TU205710 other upstream 167195 4824253 ~ 4829009 (+) True G151830
XR_005641998.1 other upstream 191291 4804760 ~ 4804913 (+) True LOC120575507
TU205680 other upstream 230656 4762986 ~ 4765548 (+) False fmc1
TU205566 other upstream 526926 4400030 ~ 4469278 (+) False pde6hb
TU205926 other downstream 216686 5215685 ~ 5219750 (+) True G151995
unassigned_transcript_717 other downstream 290922 5289921 ~ 5289993 (+) True trnar-ccu_4
TU205974 other downstream 360655 5359654 ~ 5361295 (+) True G152024
TU205981 other downstream 371951 5370950 ~ 5377739 (+) True G152028
unassigned_transcript_718 other downstream 462690 5461689 ~ 5461760 (+) True trnaq-cug_13

Expression Profile