RNA id: XM_039824989.1


Basic Information

Item Value
RNA id XM_039824989.1
length 1489
RNA type mRNA
GC content 0.43
exon number 6
gene id ccdc137
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14964295 ~ 14969477 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAAAGTTGGCCTGAGTATTTTTTAGATGCCGTAGCTCCGTCAACATAGTTTAATGATtcatttaactttattgaagaaaGTATATTGGCGAACTAAAACTAAAGTGATAAAAAGCTCAAACGAGATGGTAAACCCAAGAAAGCCAAACAAGACCACCTCGAACACATCCCCTTTAAACTCCGAGAGATAATGAAGAGCAAGGAGAGAATGAAAACTGGACCCTTGAACACCAAAAAGCTTAAAGAGGCCATCTCCCCTAAAGGTAAACCAGACGATTCCGAAAGTGGAGACATACCTGTCCCACATTTCAGGAGGGGAAAGGCGGAAAGTGAGAAAGCATACCTACGGCGCATGGAGAATGAGACAAAACACGTCCTCTTTCTCACAAAGAACCAAGTAGACAGAAAGCCTGAGCTGGATGCAGACAAACAAGAGAGGCCCGCAGACACGGGCAAGTCTGAGAAAAAGAAGGAGCATGATAAAGTCAGATTACAGAGGCTACATCAGAAAAAGTTGGACAGACAAGAGGACaagatggaaaaagagaggtTTGTAGatTATGTTCCCTTTGGTGAAGTTGCAATGGCCCCGCCGTCTTTCAGCGCCAAACCCAAGAAAGCTCCAGTCAGATCTCAGAAGGCATCAAAGGAGCTGCTTCTCAACTCTCTCTTAGGCCACACGGTGATCTCCACAGCCAAGCCCTCCATGGCCAGACAGAGAATcatggaggaagagagggagcgagCAGTGGAGGCCTACCGCCTTcttaagaaacagaaacaacagCAGCATGAGGCCAGGGCTGCTAATCTGGAAAAACTTAGGAACCCTCAgtgatgttttatttgtaatttagAAGTCCCTGACTTCAGTCAGCAGTGAAGCACAGAAACTGAAACAATGAAAGATAACCATCAGCAGactgtaatgtactgtatgtgtgatggAACTGGAACTGCCAGTGTGGGACCTTACCACAGCGTAGCTAACTGTCAGGGAAATAAGTAAACATTTGAATCTGCTGCCCACAGTATGAGGTAAGTAGTGATCAACATTCACCTGCCACTTTCACTGTCAAATATTTAGCTccaaagagaacaggacattcAAATTGTTAATGCACGTTTAAATGCCTTATTAAGACAGATTCACCCCTAACTACGTACATTGAGACAGGTTGATTTCTCGCCCTCAAACTGTGTCAGATGTTCACTCGCAGCCATGGTGTTTGGTTGTATTTACACTGTTTTTGTATTTGCGTATTTAGATAGTCACTATGACGTCATTTGTGATGTGGTAGACAATAAAATCATAAAGGCTATGTCAAGGCAAAGATAAACCTTCAATTATTTGCTGTTGTCCCACTAGATGGCAGTCCTCCTGCAGAAAGCTGCTTTCATGTTTGTATGGAGAGCAGAACATGCACACTGAATTGTTTtggactttaaaaaaacaaaaaaaaagagtaaatcTGTTTTTGATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210102 lncRNA downstream 449 14963233 ~ 14963846 (-) True G155039
TU210082 lncRNA downstream 68671 14895379 ~ 14895624 (-) True G155025
TU210075 lncRNA downstream 81390 14879627 ~ 14882905 (-) False ush1ga
TU209979 lncRNA downstream 299624 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 317226 14640102 ~ 14647069 (-) True G154953
TU210111 lncRNA upstream 15657 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 33579 15003056 ~ 15007022 (-) False LOC120573849
TU210204 lncRNA upstream 164480 15133957 ~ 15139853 (-) False LOC120574278
TU210217 lncRNA upstream 186952 15156429 ~ 15162435 (-) True G155106
TU210240 lncRNA upstream 342603 15312080 ~ 15313592 (-) True G155126
XM_039824984.1 mRNA downstream 10022 14950264 ~ 14954273 (-) True btbd17b
XM_039825668.1 mRNA downstream 14218 14936968 ~ 14950077 (-) True LOC120575070
XM_039823774.1 mRNA downstream 74813 14882288 ~ 14889482 (-) True ush1ga
XM_039825829.1 mRNA downstream 89663 14869942 ~ 14874632 (-) True LOC120575176
XM_039825721.1 mRNA downstream 106715 14854129 ~ 14857580 (-) False LOC120575102
XM_039823823.1 mRNA upstream 3875 14973352 ~ 14975399 (-) False LOC120573908
XM_039823822.1 mRNA upstream 3875 14973352 ~ 14975005 (-) True LOC120573908
XM_039823718.1 mRNA upstream 33536 15003013 ~ 15008712 (-) False LOC120573849
XM_039823717.1 mRNA upstream 33536 15003013 ~ 15005280 (-) True LOC120573849
XM_039824961.1 mRNA upstream 75482 15044959 ~ 15100590 (-) False baiap2a
TU210040 other downstream 106738 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 106738 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 136075 14796026 ~ 14828220 (-) False LOC120574214
TU210021 other downstream 173517 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 420303 14534971 ~ 14543992 (-) False LOC120574989
unassigned_transcript_852 other upstream 29296 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 40321 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 473687 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 594656 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 748370 15717847 ~ 15724422 (-) False tecra

Expression Profile