RNA id: XR_005641939.1


Basic Information

Item Value
RNA id XR_005641939.1
length 2407
RNA type transcript
GC content 0.49
exon number 17
gene id LOC120574989
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14533682 ~ 14543994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaggaagtctGTATGATGAGTTTTGACAAAAGGCCAAGAATAGCCACAATGTTAGCAATAAACCCACTGCCCCGTGGTCCACTATGTGACTGGTGGTGAAGTCTGTGTCACTGggagctgtgtgttttcaatAACCAGAGATCATCGAGGACCATGGCATACAGTGTCAACATTTGTGAAACGGATTCTGAGTCTGACTTTGAGAACCTGGGAGAAAGTGAACCAGGTCAGGTCTCCTTCCAGCTCGTTGCAGAGCCAGCAGTCAGCACCCAGAGGTGTCCACAAACGGACGTTTTTAGGGAATGCACACGTACAGAACATCTGCCATTTACTGCAAGCGGCCACGAGAGAGACGAGACACTGGACAGGGAGCAGATGAAATCTCTACAGAGGCATCACTGGTCAGCTGCTACCTTAAAGGTCCTTGCCTCAATGCCCAGTCGCACTGCTGGGATAAATAACGCTGCAGTAATTCCCCGACATGCCAGAAACTTGTCTCCGTTACACCGACACCAGACCTCCTCCCAAGATTCTTCTCAGCCCTCCAGACCAATGCAGGAAGACTCTGTCCAGGCCAATATCGAGGAGGAAATCAGTAATGAAGAAAACAAGAAGGAGCAGTTGGTGTCCATCCTCCGAGGCCTCTCAGTGAGCGAGGGCATGCGCAAGCTGCAAGCCTCGCCGCTCAGCCTGGCAGAAAAGATGGAAGTCAGGCAACTTGCTTTTAGTGACGTAGCTGAGAGTTCACTCATCAGAAATATCCCATGCTACAGTCGTCTAAGCGTGTACATTTCAAGGacTTGGCATCACTGCCTGTTTAGCTGCCTACCTGtcctcccttccctccagctGTGGCATTCACCCATAAAGAGACTGAGCGGACGTTTCGGAACCGGGGTACTTTCCTACTTCCTGTTTCTCCGGACCCTCCTGCTTTTGAACCTCCTCCTTTTCGTCATCAACGGCCTGCTCCTGGTCTTCCCTCAAGCCGTCAACCCTCCTCCCCGTCTTAATGACTCTAATCTCGACACTTTCACTGGCCTTGAGCTTCTCACAGGCACTGGCTACCTCTCTCAGAGTGTGATGTTTTATGGCTACTACACCAACATCATTCCCAAAACTTGTCGAGCTGCTGACTCCACTGCTGCTGAATCCCCTGATCTGCCAGTCTGTGATTCCAAAAAGCCGTACAGTATACCTGCAGCCTATTTCTTTACCATCGCCATCGCCTTCTACACAATCTGCATCATCCTTGTGTACAGCATATCCAAGGCCTTCGGGAGAGGTTTTCAAGTCCTCAAGTCTAATGGGAATCTGGCAGGAAAAGTTTTCTGCTCCTGGGATTTTAAAGTCATTAAGAAGACATCTGTCAGACTGCAGTCTGAGAAAATCAGTACTCAGCTCAAAGAACTGCTGTCTGAGATGTtgcatggagaaaatcaaaagaGCTGCATGCAGCGACTGTGCCGCCTCATGCTGCACCTGGTGGCGTGGGCTGCATGTCTGGCAACCATCTTTCTGAGTGCCATGGCAGTCCACTACCTGTCAGAGGGTGCCATTAAACGGAGTTGTTTGGAAAAAACTGAGCTGCTGCTCTTGGCTGCAGTGGTGTCAGGCATTAACCTGTTACTCCCGGGCCTCTTCAATCTGTGTGCTTGGGTGGAGAATTATGACTCACCCAGTGTTCTCGTCTATGTCTCCATCTTCAGGAACCTGTTGTTGAAGGTCAGTATTGTTGGAGTGCTGTGTTTCCGATGGCTGGGGAGAATTGCTGTGGAACGAGAACGTTGTGGTATAAAGTGTTGGGAGAGCTTTGTGGGGCAAGAACTGTATCGCTTGCTCCTGATGGACTTTGTCTTCACAGTGCTTTACACTTTTTTCGGAGAGTTCCTGTGGAGGCTCTTTACCAAGCAAGTGCTGAAAAGGAACAGGATGCCAGTGTTTGACATTGCTCGTAATGTGCTGGAACTCATATATGGACAAACCCTTACTTGGTTCGGGGTGCTGTTTGCTCCACTGCTTCCTGCAGTCCAGATCATAAAACTGTTTGTGCTATTCTACATGAAGAAGAGCAGTCTGGTGCTGAACTGTCAGGCATCGAAGAAGCCCTGGAGGGCCAGTCAGATGACAACATTTTTCATCTCTCTTTTGTGCTTCCCCTCATTTCTTGGCGCTGCCGTGTCTGTCACTTACACAATTTGGATgccAGGCAGCTGTGGGCCCAGGAGCTGGAGAACAGCCACCTGATCCTGTCTTGGCTCAGCTGGGCCTACAACTCTCTGATGGAGAACCCACTGTTCTTATTCCTCACCACTGGAGTCTTTCTAATGGCGATATATTTTCACACTCAGGTTATTGATGGCCAAAGGAGAATCATCAGTCGGTTAGGAAAGCAAAttgaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209938 lncRNA downstream 5852 14526134 ~ 14529119 (-) False cenpx
TU209899 lncRNA downstream 77935 14455062 ~ 14457036 (-) False LOC120574967
XR_005641944.1 lncRNA downstream 197897 14330945 ~ 14337074 (-) True LOC120575037
TU209820 lncRNA downstream 208035 14325973 ~ 14326936 (-) True G154825
TU209781 lncRNA downstream 435690 14078514 ~ 14099281 (-) True G154788
TU209980 lncRNA upstream 83758 14627750 ~ 14664671 (-) False G154948
TU209984 lncRNA upstream 89186 14633178 ~ 14636802 (-) True G154952
TU209985 lncRNA upstream 96110 14640102 ~ 14647069 (-) True G154953
TU209979 lncRNA upstream 118056 14662048 ~ 14664671 (-) True G154948
TU210075 lncRNA upstream 335635 14879627 ~ 14882905 (-) False ush1ga
XM_039825840.1 mRNA downstream 2321 14529438 ~ 14532650 (-) True LOC120575183
XM_039823675.1 mRNA downstream 5818 14526126 ~ 14529153 (-) False cenpx
XM_039823674.1 mRNA downstream 5963 14526126 ~ 14529008 (-) True cenpx
XM_039826292.1 mRNA downstream 46048 14481337 ~ 14488923 (-) True notum1a
XM_039826293.1 mRNA downstream 55597 14476834 ~ 14479374 (-) True LOC120575481
XM_039825808.1 mRNA upstream 174001 14717993 ~ 14730049 (-) True LOC120575160
XM_039825807.1 mRNA upstream 196545 14740537 ~ 14748030 (-) True fscn2a
XM_039824440.1 mRNA upstream 221742 14765734 ~ 14790772 (-) True LOC120574213
XM_039824441.1 mRNA upstream 251654 14795646 ~ 14828239 (-) True LOC120574214
XM_039824442.1 mRNA upstream 251654 14795646 ~ 14827389 (-) False LOC120574214
TU209766 other downstream 477659 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1113020 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1555286 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1562161 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1691997 12842893 ~ 12842974 (-) True trnal-uag_2
TU210021 other upstream 246064 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 252034 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 307947 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 307947 14851939 ~ 14857557 (-) True LOC120575102
unassigned_transcript_852 other upstream 454781 14998773 ~ 15000144 (-) True LOC120574429

Expression Profile