RNA id: XM_039825515.1


Basic Information

Item Value
RNA id XM_039825515.1
length 3350
RNA type mRNA
GC content 0.40
exon number 23
gene id LOC120574974
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13194950 ~ 13213720 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTCAAGTTAGATCAAGCACCAGAGGAGTCCTGTGTTAAAGAGCAACACACAAGACTTGCAGTTCTTGGCCATGGATGACTTTGTCTGTAACAAATTAACTGAATGGCGTCTCAGCAATctcattaaaatatttaaagATCAAGAAATTGACGAGGAAAGTTTTCACGATCTTGATGATAAAGAAATTGATAAACTCATCACAAAGGCGGGACCAAGGATAAAATTCAAGAGACAATTCAAGTTGTTTAAGAAAGAACAAAACACAGCATATCAGGAAACAGTTGATTCTTCTGCCCAAGAGCATGAAGAAGCTGTTTCTGCTCAGGTGTGTCCGTCCACCAGTGGCGCCAGTAATAAAGaAAAGAGGAAGTTGGATCTTCAGGGCGAGTCCAGCAAATCTCAATCACCAGCTAGTAAACGACACTGTGGCACTAAACCACGACCAGACTCAGAAATACTGACTAAAGTGAAAAGCATCATGAGCTTTGTTAAGAAAAGACTACCGGCCCAAGACAACAAACTCAGCAACTTCCTGAAGGATACAATTGATGATTTGGAGACAGACAAGAGGGAGGTTGTCGGTGTCTTTGGTAAAACTGGGTCTGGAAAGAGCTTTTTGATAAATGCTGTCATTGGAGAGATGAATCTCTTACCCACTGGAAGTGTCTGTGCATGTACCTCAGTCATGATCGAAGTCAAGGCTAACACGCAGAACAAGACCTATCAGGCGGACATTGAGTTCATTACAAAAGAGGAGTGGAAGGATGAGTTGTTTCAGTTTCTTGGGGATAAAGCAGGTCAGGAAGATGAAGATTATCCTGAGTTTAAGGAAAAGCTGTCAGCACTGTAtggagaagaaaaggaaaacaaaacctCTGAAATGCTCATGgagaaaaaatatttcaaagaaaTTCCGGAATTTCTCGAAAACAAGAAGAAGATTTTGACATGTGAATCAGCTGAAAAGCTATCTACAACACTTGTCGGATTCACAAAAGTCACAAGACGTAACTCAAAAGATGAAGAAGGAAAGAGGTGGTACTGGCCACTGGTGAAGTGTGTGACTATCAAGGTGCCCAATAATGATCTTCTCCGGCATGTCACACTTGTGGATCTTCCTGGAAATGGGGACCGTAACAAGAGCAGGGACAACATGTGGAAACAGGTAGTTGGAAGTTGTTCTACTGTGTGGATTGTGACTGACATTGATcgagcagcagcagagaaagaAGCCTGGCAGATCCTGGAAAGTGCCAGCAGTCTCATGGGAAATGGGGGCGAGTGTCAGCACATTCTCTTTATCTGCTCCAAGTCTGATGGGAGTCTTAATAACCGTGAAGCCATACTTGACAGAAACATGCTAGCCAAGACAGAAGTGAGCAAAAGATTCAGCGAAGAAAAGACGATCAAGaaacaatTCAGTGATGAATGTTTGAAAGTTCTCACAGTGACCTCCACAGAGTTTCTAGTGAAAAACCATCTAAACCTAGATGAAACTGAAATACCCAAACTTAAGGAATTTCTGAAAAAACTCAATGACTGTCACTCAGAGACAGTAAACTATGTGTCTGGAGCTCGTGGGATTCTCTCTCTGATTCAAGGGGCCAGCCGTAGAGACGGGgctgacaaaaacacagatgtgtGCACAGACCTTGACAAAAAGATGAAGGATGAACTTGATAAAGTCAGAAAACCAATGGAGGAGGCCTACAAGGCTTTTGAAAAATGCCTCAGTGAGGGGGTTGAAAGATCAAAAAGTTCATGTGAAAGTGACTTGATGTCGGTCATAGATTCTAGAAAAGTAACAGGTGGAGCCTTTCACCAGACATTGAAGAGTGTAGTTAATAAAGGTGGCACCCACAAACCAAAAAAAGGGAAACCAATAAATCTCAATGGGACGTTAGCTTCATGCCTGACTGACAGCATTGACGAAGAATTCAAGAAGACCTTCCCAAATGAAAGAAAGTGTGGACCATTTGACGATGTCATAAATAAGTTTTCACTTGACACTGAGAAGCTGATTGGAAAGTACAAAGATGTTGAACTGCAGCTGATATTTCTCAAGACAGAGGAAGACAAGATTAAGACAGAACTCAACAAAATCATCCGGGAGCGTAAGAAAACGATCTACAACAGTTTGACCGAGACAATTGGGATAAACATGCAAGAAGGCTATGACCAAGCAGCAACATTTAAAGGAAAGGACACGCTGGAAAATATGAGAGACACTCTTGAGATGCACGTACGTGCTGCAAAGAACATCATGTTTAAGGAGGCTAAAAAAGAATTGTTGAAACAGCTGAGAGACTTCATGAAAGAGATCCTGGAGAAGCTGAAGAAAACAATGCAGAAATCAATTGAGCTCTCACTCAAGACAGATGGTGACTCAATCCCAGaTGTTGCACAGCAGCTTAAGGAGGTGAACGACTACTACAATGACCTGAAGGCCCAGCAGCAGAGTCCATGACGTGCACAGGTTTGCTCCGTGGAGAGAAACAGCCGAGGCCAGATGCCCCACTGAAGGTCCTGCAGACCCACCGGTTACTGACGTCAGGCCTCTGGATTTAGTCTCAACCATTTTTGTCAAGTTGCTATCCCTGTCCTCTTTAATTGTTGTTTTGATATGTACTTTGAGTTTGCTTATGGTGAATTACATGGTGAGAGATTttagattttctatttttgattATAGATCAGAGGCAGACAGAaaatgtggagagagagagagagagagagagagagagagagagagagagagagagagagggatgacatgcagcaaatgttCCTAGTCTAATTTAAACCATTGATGTGGTTCTAATGGTACACGTCTTAGCCACTAGGCCAATAtggtgtatttttgtttttaatgatttgattttttgttCTCTTTGAACATATTGTCAtgtttttcatttgatttttttttctctttggatacagtatattttcatgttttttttccataattttattttattagtattGGTCAATTGGGATGAGAGTGGTGaaattttaatgattttatgGGTGTGTAATTTAAATTGTAACCTTGATTTCGGTACATACTGTAGGGATGTTGGATTTGACATAGGCTTCTCAAAGAATGATGATGATCTTTTATCCTTAATGTTCAAAGACTATAATATAGCTTACtgcaaaataatgttttttatgtCTTCATAtatgagaaatacagagaactAGATGATAGCAATAAACCTGCTGGCTTCTCACGATTTactgtacttttattttttaatctacACTATTTCTAAATGCTTAAATAATTGAATATGGTATACTGCCCGATAAACCTCAATAAAGTTCACTTATGAGTCAAAGTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209357 lncRNA downstream 241562 12871558 ~ 12953388 (-) False G154515
TU209356 lncRNA downstream 241562 12947199 ~ 12953388 (-) True G154515
XR_005641887.1 lncRNA downstream 256286 12931733 ~ 12938664 (-) True LOC120574707
TU209363 lncRNA downstream 263631 12874360 ~ 12931319 (-) True G154517
TU209269 lncRNA downstream 413505 12779015 ~ 12781445 (-) True G154446
TU209510 lncRNA upstream 39204 13252924 ~ 13253206 (-) True G154600
TU209511 lncRNA upstream 40753 13254473 ~ 13254773 (-) True G154601
TU209628 lncRNA upstream 375804 13589524 ~ 13631836 (-) False tfap4
TU209669 lncRNA upstream 442298 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 541944 13755664 ~ 13827791 (-) False G154717
XM_039825510.1 mRNA downstream 7397 13160825 ~ 13187553 (-) False LOC120574973
XM_039825513.1 mRNA downstream 9062 13160825 ~ 13185888 (-) False LOC120574973
XM_039825512.1 mRNA downstream 14260 13160825 ~ 13180690 (-) False LOC120574973
XM_039825509.1 mRNA downstream 14506 13160825 ~ 13180444 (-) True LOC120574973
XM_039825514.1 mRNA downstream 15607 13160825 ~ 13179343 (-) False LOC120574973
XM_039824680.1 mRNA upstream 12747 13226467 ~ 13262644 (-) True LOC120574422
XM_039824085.1 mRNA upstream 110515 13324235 ~ 13343615 (-) True pdgfab
XM_039824086.1 mRNA upstream 110515 13324235 ~ 13343614 (-) False pdgfab
XM_039824082.1 mRNA upstream 142506 13356226 ~ 13421951 (-) True prkar1b
XM_039824084.1 mRNA upstream 142506 13356226 ~ 13412053 (-) False prkar1b
TU209391 other downstream 215265 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 222140 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 351976 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 629479 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1708025 11486854 ~ 11486925 (-) True trnaq-cug_14
XR_005641817.1 other upstream 121729 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 837018 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1321251 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1576336 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1582306 14796026 ~ 14828220 (-) False LOC120574214

Expression Profile