RNA id: unassigned_transcript_827


Basic Information

Item Value
RNA id unassigned_transcript_827
length 459
RNA type V_gene_segment
GC content 0.49
exon number 2
gene id LOC120574606
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9759625 ~ 9760180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACTTGATATCATGCTGTCAGTTgcagcagaagaagagaagctCCCATCAGATCACCTTCAATAGCAACCATGTTCTCtgtagctctgctgctgctgctggctgctggatCCTgtgtgaagtgtgaagGGTTGACCCAGCCAGCTTCTGTGACTGTGCAGCCAGGTCAACGTCTGACCATCACCTGTCAGGTCTCTTATTCTCTCAGCAGctactacacagcttggatcagacagcctgCAGGGAAAGGACTGGATTGGATTGGAATGGCAGCAGTTGGATCCACCACATACTACAAAGATtcactgaagaacaagttcagtatcAGCTTGGACTCATCCAGCAACACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagagccacagtaacacaaaccatcagtagacctgaacaaaaacccctcag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 44563 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 71796 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 81548 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 121656 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 216691 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 102805 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 112141 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 161372 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 165958 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 187391 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 717580 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 790580 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 119122 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 178783 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 180343 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 180709 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 232609 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_825 other upstream 2717 9756489 ~ 9756908 (+) True LOC120574655
unassigned_transcript_824 other upstream 5362 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_823 other upstream 7024 9751939 ~ 9752601 (+) True LOC120574628
TU207814 other upstream 7067 9752048 ~ 9752558 (+) False LOC120574628
unassigned_transcript_822 other upstream 8569 9750618 ~ 9751056 (+) True LOC120574616
TU207825 other downstream 5149 9765329 ~ 9765824 (+) True G153408
TU207818 other downstream 6290 9766470 ~ 9782565 (+) True G153401
TU207826 other downstream 8458 9768638 ~ 9769251 (+) True G153409
TU207803 other downstream 10455 9770635 ~ 9771125 (+) False LOC120574397
TU207811 other downstream 23652 9783832 ~ 9909154 (+) True G153394

Expression Profile