RNA id: TU231026


Basic Information

Item Value
RNA id TU231026
length 799
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G170384
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31910912 ~ 31912412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgcagggCTCCAATGGCGGCGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGAGCGATCTCCCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTACCGACGGATCTCTctcagagccacggtgccgggCCTGTAACGATGGGGCTTCTTGACGCCTCCAGTAGAGGGGGCACTCTTGCGAGCAGCCTTGGTGGCCAGCTGCTTACGAGGAGCCTTTCCTCCAGTGGACTTACGAGCAGTCTGCTTGGTACGAGCCATTACGATGAAGAGTCACCTGAAGGGAATATAAATAATGTATCAGCGTGCCTTGCCaccagggttctaaattagcaccgtttaccagccaaatgctggtgaaatatgcaagtggctggtagatttgcttcactcaccagccaaaaaacccaatggtaatctattgaatggctggtaatatttgaacattcattagccatttggctggtagacgaaaatgttaattttgaagcctgctTGCCACGTTTAAGAGCTGCTGTCCTGTACATGCTGTTGACAATAATAATGTTATTGTTAAATACACTGGTCGTTTATTCATACATTTCTACTCTGTTCATTGTGGGGTTTAAATATCAGTGTTATCATGGGCCCTCTGGACAAATGTTCCTTCTAAGCCGACAGGGAAAATGTATATTTAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231005 lncRNA upstream 78276 31830100 ~ 31832636 (+) True G170365
TU230917 lncRNA upstream 196659 31713287 ~ 31714253 (+) True G170293
TU230915 lncRNA upstream 207071 31701745 ~ 31703841 (+) True G170291
TU230886 lncRNA upstream 221804 31618457 ~ 31689108 (+) True G170266
TU231057 lncRNA downstream 166125 32078537 ~ 32080878 (+) True G170410
TU231064 lncRNA downstream 186841 32099253 ~ 32103217 (+) True G170417
TU231120 lncRNA downstream 478839 32391251 ~ 32393356 (+) False igsf9bb
TU231119 lncRNA downstream 481446 32393858 ~ 32394530 (+) False igsf9bb
TU231117 lncRNA downstream 482210 32394622 ~ 32394876 (+) True G170466
XM_039778348.1 mRNA upstream 4471 31901989 ~ 31906441 (+) True crx
XM_039777068.1 mRNA upstream 209319 31696132 ~ 31701593 (+) True ckma
XM_039776960.1 mRNA upstream 299199 31602514 ~ 31611713 (+) True micu2
XM_039777922.1 mRNA upstream 313819 31552788 ~ 31597093 (+) True sptbn4a
XM_039777923.1 mRNA upstream 313819 31553493 ~ 31597093 (+) False sptbn4a
XM_039777471.1 mRNA downstream 334516 32246928 ~ 32394076 (+) True igsf9bb
XM_039777466.1 mRNA downstream 334516 32246928 ~ 32394076 (+) False igsf9bb
XM_039777469.1 mRNA downstream 334516 32246928 ~ 32394076 (+) False igsf9bb
XM_039777468.1 mRNA downstream 334516 32246928 ~ 32394076 (+) False igsf9bb
XM_039777470.1 mRNA downstream 334516 32246928 ~ 32394076 (+) False igsf9bb
unassigned_transcript_957 other upstream 102006 31808825 ~ 31808906 (+) True trnas-gcu_13
unassigned_transcript_956 other upstream 103108 31807723 ~ 31807804 (+) True trnas-gcu_12
unassigned_transcript_955 other upstream 103816 31807015 ~ 31807096 (+) True trnas-gcu_11
unassigned_transcript_954 other upstream 105189 31805642 ~ 31805723 (+) True trnas-gcu_10
unassigned_transcript_953 other upstream 105729 31805102 ~ 31805183 (+) True trnas-gcu_9
TU231056 other downstream 151755 32064167 ~ 32064730 (+) True G170409
XR_005636542.1 other downstream 489511 32401923 ~ 32420402 (+) False cfap58
XR_005636522.1 other downstream 1043480 32955892 ~ 33004339 (+) False pknox2
XR_005636585.1 other downstream 1439852 33352264 ~ 33352329 (+) True LOC120544785
TU231434 other downstream 2420002 34332414 ~ 34336348 (+) True G170735

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00012994 True 1052 mRNA 0.55 3 CM030125.1 15950836 ~ 15955239 (-)
tiger barb (Puntius tetrazona) TU262248 True 2854 TUCP 0.42 3 NW_025047826.1 419826 ~ 422810 (-)
mexican tetra (Astyanax mexicanus) TU262248 False 842 TUCP 0.50 4 NC_035918.1 28192436 ~ 28194171 (+)