G170384 (h3f3b,LOC107377396,LOC101073377,LOC107550302)


Basic Information

Item Value
gene id G170384
gene name h3f3b,LOC107377396,LOC101073377,LOC107550302
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31910912 ~ 31912412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU231026
atatatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgcagggCTCCAATGGCGGCGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGAGCGATCTCCCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTACCGACGGATCTCTctcagagccacggtgccgggCCTGTAACGATGGGGCTTCTTGACGCCTCCAGTAGAGGGGGCACTCTTGCGAGCAGCCTTGGTGGCCAGCTGCTTACGAGGAGCCTTTCCTCCAGTGGACTTACGAGCAGTCTGCTTGGTACGAGCCATTACGATGAAGAGTCACCTGAAGGGAATATAAATAATGTATCAGCGTGCCTTGCCaccagggttctaaattagcaccgtttaccagccaaatgctggtgaaatatgcaagtggctggtagatttgcttcactcaccagccaaaaaacccaatggtaatctattgaatggctggtaatatttgaacattcattagccatttggctggtagacgaaaatgttaattttgaagcctgctTGCCACGTTTAAGAGCTGCTGTCCTGTACATGCTGTTGACAATAATAATGTTATTGTTAAATACACTGGTCGTTTATTCATACATTTCTACTCTGTTCATTGTGGGGTTTAAATATCAGTGTTATCATGGGCCCTCTGGACAAATGTTCCTTCTAAGCCGACAGGGAAAATGTATATTTAACCTG

Function

symbol description
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3.3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231026 True 799 lncRNA 0.48 2 31910912 31912412

Neighbor

gene id symbol gene type direction distance location
crx LOC103357888 coding upstream 4471 31901989 ~ 31906441 (+)
trnas-gcu_13 NA coding upstream 102006 31808825 ~ 31808906 (+)
trnas-gcu_12 NA coding upstream 103108 31807723 ~ 31807804 (+)
trnas-gcu_11 NA coding upstream 103816 31807015 ~ 31807096 (+)
trnas-gcu_10 NA coding upstream 105189 31805642 ~ 31805723 (+)
fez1 fez1 coding downstream 522547 32434959 ~ 32458317 (+)
panx3 panx3,LOC102789912 coding downstream 1098402 33010814 ~ 33020920 (+)
opcml LOC103394960,LOC103366991,LOC104930635,LOC102299579,LOC100703901,LOC101464466 coding downstream 1199181 33111593 ~ 33503252 (+)
LOC120544785 NA coding downstream 1439852 33352264 ~ 33352329 (+)
lim2.1 LOC103356037,LOC104955000,LOC104935109 coding downstream 2308151 34220563 ~ 34225105 (+)
G170365 capns1,LOC107700232,LOC107548486,LOC107655908 non-coding upstream 78276 31830100 ~ 31832636 (+)
G170293 NA non-coding upstream 196659 31713287 ~ 31714253 (+)
G170291 NA non-coding upstream 207071 31701745 ~ 31703841 (+)
G170266 NA non-coding upstream 221804 31618457 ~ 31689108 (+)
G170410 NA non-coding downstream 166125 32078537 ~ 32080878 (+)
G170417 NA non-coding downstream 186841 32099253 ~ 32103217 (+)
G170466 NA non-coding downstream 482210 32394622 ~ 32394876 (+)
LOC120543793 NA non-coding downstream 1190407 33102819 ~ 33103225 (+)
G170631 NA non-coding downstream 1335617 33248029 ~ 33248381 (+)
G170284 NA other upstream 230846 31677998 ~ 31680066 (+)
micu2 micu2,LOC103399085,LOC104943497 other upstream 299199 31602514 ~ 31611713 (+)
LOC120544216 NA other upstream 401496 31480312 ~ 31509416 (+)
G170156 NA other upstream 692628 31185937 ~ 31218284 (+)
pcp4a NA other upstream 1408315 30474451 ~ 30502597 (+)
G170409 NA other downstream 151755 32064167 ~ 32064730 (+)
igsf9bb LOC103357894,LOC103394972 other downstream 334516 32246928 ~ 32394530 (+)
cfap58 cfap58,LOC102788841 other downstream 489510 32401922 ~ 32424029 (+)
robo3 LOC103364814 other downstream 800186 32712598 ~ 32815543 (+)
pknox2 pknox2 other downstream 975169 32887581 ~ 33004339 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding CM030125.1 CM030125.1 15950836 ~ 15955239 (-)
tiger barb (Puntius tetrazona) G176821 LOC107572204,LOC107556640,LOC106912265,LOC105355442,LOC107681642,LOC107747853 misc NW_025047826.1 JAEQBD010000171.1 374704 ~ 422810 (-)