lim2.1 (LOC103356037,LOC104955000,LOC104935109)


Basic Information

Item Value
gene id lim2.1
gene name LOC103356037,LOC104955000,LOC104935109
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 34220563 ~ 34225105 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776690.1
TGGAGCCCCAGGTTCTCCCTATTCATCGCGTCAAGCGCCGGTGCTATTAGCCTGCTGGAAACCTGCCTGTCTTGGCATTGTAGGATCTTGTTGTGTTTTGTCAGGTAACCCTGTCTCCATAAACATCTTCATACAAAGGGGTTGATTAAGgttCAGGATGTACAGCTTTATGGGTGGAGGTTTGTTCTGTGCAGGCGTGGGGAACATCCTCCTGATCGTTTCCACAGCAACCGATTACTGGATGCAGTATCGGCAGTCCAGCAACTACATGCACCAGGGCCTGTGGCGCTACTGTAAGCCGGGGAAATGCTTCCCACACAACGAGAGCATCGCCCACTTAGATGCCACCCGTGCCCTCATGATCCTCTCTCTCTTGGCCTGTTTCATCGGCATCATCATTGGCATTATGGCCTTCATCCATTACTCCTCCTTCGACAGGTTTGACAAAACCTTTGCTGCAGGCATCTTGTTTTTCATCTCATGCTTTTTAGTGTTTCTAGCAATGGCAGTGTACACTGGTGTGACTATTAACTACTACGGAAAACGCTATGGAAACTGGAGGTTCTCCTGGTCCTATATCATCGGCTGGGTGTCGGTGGTGCTCACCTTTTTTTCAGgtATATTCTATCTGTGTGCCTATCGGATGCATGAATGCCCCAGGAGCGCTAACTCTCACTAGAAGACCTGCACCATCACCCGAGCCAGGAGCTATGGATTAGGATCGCGAGGCTGCGTGTACATTCGCACCATCAACAAGGATGCAGAGCTTACCTGTGGAACATGAACGATCAAAGCTTAAATGGGTTGAATAAAAAGATTTGGGAGAA

Function

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776690.1 True 827 mRNA 0.49 5 34220563 34225105

Neighbor

gene id symbol gene type direction distance location
opcml LOC103394960,LOC103366991,LOC104930635,LOC102299579,LOC100703901,LOC101464466 coding upstream 717311 33111593 ~ 33503252 (+)
LOC120544785 NA coding upstream 868234 33352264 ~ 33352329 (+)
panx3 panx3,LOC102789912 coding upstream 1199643 33010814 ~ 33020920 (+)
fez1 fez1 coding upstream 1762246 32434959 ~ 32458317 (+)
crx LOC103357888 coding upstream 2314122 31901989 ~ 31906441 (+)
bsx bsx coding downstream 3515 34228620 ~ 34230777 (+)
LOC120544501 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172 coding downstream 83792 34308897 ~ 34309654 (+)
si:ch73-261i21.5 NA coding downstream 87930 34313035 ~ 34326998 (+)
zpld1a zpld1,LOC103372413 coding downstream 570886 34795991 ~ 34823406 (+)
alcama NA coding downstream 611125 34836230 ~ 34917369 (+)
G170643 NA non-coding upstream 485554 33627289 ~ 33735009 (+)
G170631 NA non-coding upstream 972182 33248029 ~ 33248381 (+)
LOC120543793 NA non-coding upstream 1117338 33102819 ~ 33103225 (+)
G170466 NA non-coding upstream 1825687 32394622 ~ 32394876 (+)
G170417 NA non-coding upstream 2117346 32099253 ~ 32103217 (+)
G170716 NA non-coding downstream 8074 34233179 ~ 34236999 (+)
G170719 LOC104954996 non-coding downstream 13041 34238146 ~ 34240070 (+)
G170717 hspa8,LOC105921217,LOC102234316,LOC107386347,LOC108249515,LOC106535866,LOC103356016 non-coding downstream 53039 34278144 ~ 34282590 (+)
G170729 zgc:101846,LOC106525086,LOC108416226,LOC105921220,LOC101161532 non-coding downstream 82823 34307928 ~ 34308769 (+)
G170762 NA non-coding downstream 151529 34376634 ~ 34384498 (+)
pknox2 pknox2 other upstream 1216224 32887581 ~ 33004339 (+)
robo3 LOC103364814 other upstream 1405020 32712598 ~ 32815543 (+)
cfap58 cfap58,LOC102788841 other upstream 1796534 32401922 ~ 32424029 (+)
igsf9bb LOC103357894,LOC103394972 other upstream 1826033 32246928 ~ 32394530 (+)
G170409 NA other upstream 2155833 32064167 ~ 32064730 (+)
G170735 hyou1 other downstream 107309 34332414 ~ 34336348 (+)
G170775 dlg2 other downstream 211855 34436960 ~ 34442150 (+)
G170896 NA other downstream 814837 35039942 ~ 35040371 (+)
LOC120575607 NA other downstream 858784 35083889 ~ 35087897 (+)
LOC120575668 NA other downstream 1097155 35322260 ~ 35324252 (+)

Expression


Co-expression Network