panx3 (panx3,LOC102789912)


Basic Information

Item Value
gene id panx3
gene name panx3,LOC102789912
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 33010814 ~ 33020920 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039776686.1
GAATACTTAAGAAGCTTTCCAATACCGTGCAAGCCTTTAGAGGAACTCTGTGGCTCTGCGAACATATTTTCTAATTGTATCACCAAAGAAACCTGGAAGACTTAAGGAGTTCAAAATGTCCATCGCCCAGGCGGCGGCCAAGGCCATGCTATCTGATGCCCTGCTGCAGGGCAGCCCCGGGATAAACCGGATCAGCCACCTGGAGCTGGAGCTTCCTCTGGACAAGGTCATCAAGTTTGTGTCAGTCGGCCTTCCGCTGCTGCTGGTGTGCATGGCCTTCGCCCGCGAGATCTCCCTGGGGCCTCAGATCAGCTGTTTCCCTCCCAGCAATTTCACCATCAAGCAGGCCAGCTATGTAGACACGTACTGCTGGGACTCTCTCATGCATCATGAGTTTGACAGCGCTGGGAACTTTGAGGAGCGCTCGCTCTGGGTTCACAAAATGTTTCCTTACTCTCTTCTGGCCATGGCGGTGTTGATGTACCTGCCGGCTCTGATCTGGCGCCAGCTCGTCATGCCCTCACTGGGCTCAGACCTGCTCTTCATTATAGACGAATTAGACATGTCGTACAACCGCTCGGTCCGACTGGCCCAGAACATTCTGGAGATGCGCCAGACCACTAAGAACCCCCTCACATTTCAGGCTGAACTGCAAAGGGCCAAGAAGAAGCGATACTTTGAGTACCCTCTCCTGGAGAGATACCTGCAGTGCAAACAGAACTCCTACTTCCTCGTTAGCATGCTTTTCTTGCGGGGCTTCCTGCTCCTGACCTTCATGACAGCTGCCTGCCTCTACCTGGCCTACTTCCACCTGTCCGCCTTCCTGCAGGACGAGTTCAGCTGCTTCGTCCGAACGGGCATGCTGCGGGACCAGAACTGGGTCCCCGAACTGGTTCAGTGCAAAATGATCGGCCAGTTGGTTTTTCAGGTAATAAGCGTGGCCAACGGTGCCATATACGCCCTGCTGGCTCCCATCGTCCTCTTCAGCCTGATCCGGCTCTTTGTGTGGGACACCACCTTCATCTCCGTCTACGAGCTCCTGCCGGCCCTCGACCTCATCAACCGGCGGCGACTCGGCTGCCCGCTGAACGACCTCAACGTCCTGCTGCTCTTCCTGCGCGCTAACGTGGCTCACCTGATGTCCTACGGGAAGGTGAGGGCCCTGTGTTCGCTGGCGCCGCCGCAGGTGGGCAATGCCGGCGCAGGCCAGGGACTGAACGCCATGCTGAGCcaagaggagatggaggagcgCGAAGAGGCCGCGATGGAGCTGGCAGAGGCGGTGGAGGAGGCCAAGGAGGAAGGGAAGTTCAACCTAGTAGACATCATGACCATTCTGGGAGCGGCGCAGGGGAGAGTGGTAAACTGCAGCGAGACGAGGCCTCTGGTGGAGGAGAATATGAGTCTCGGTACCGTAACACTTATCTACACACTCAAACGCATTCTGCTAGTGGCTATTTTCGTCTACATCATTTGGGATGTACAGAAAATCATTAAGTGACTTCCAGACTACACATGCAGTCTTTGAAAATACATAACAGGTGCTTTAAATATAAGATAGCATAAGCCGTTCTCACTGAACAGACTCTGAATACAGAATAAGGTCATTTAAATAAAgctatgtttattattattatatccacATGGACCTGAGGAGGTAGTTTGAGAAACATTTGCAACTGCAGGCAAATTCGAGTTAATTCAAATACCATTGTTTAGTCATTTTACTCTTTATTGTCTGGAACTCTATTGCCTTTGCTCTTTCTTTCTGAAGCCAGATTGAACTGCCTATATTTCTAAAAGAGTCTTTTAAGAGCACTGGCTAATGTAGGAGAGATAGATTTGTGGTACTTCCTAGCCCTAActgccctctctgtctcttcacaGAGCCAAACCACCAGGGCTACCATGAGTTGAAGGAGACTGCACCATTTAGTCATTACTAGGCCTCCTATGGACTGAATCAATGTGATAACAATGGGGGGGTTGGTACAGTAGATTTTCAGGAGTACTGTATCCACAAAGACTGTGGACATCAATCAAGGGTTTCTGTGgtctgaagacaaaaaaaacaaaactcttTTGGAATTACAGGGCAAATTGTTCTGGCTAGAAATGTCAATGTATTTGGAATTGTCAGTTTTCAGCATGTGTGCATCTGTAGCTGCCACAGACTTTCTTTCTGTGTCCTACTGCGGTCCCATGTGTTGTTTAGGAGGCCAGCGGAGGCTAGAATTTGAAGGAGAGCACGCAAGAGAAAGTGGCTGTTGTAATTATGGTGAGAGAACACACAGCATAAGAGCAAAGTATaactacacacaaaaaaacacatttgtcatTGTGACTGGGTTAGACTGATCATTTGTGAGAGTTCTGAGAGTATGTACATCAattgagagacagaaagacattttcagtggCAGCTATAGATTCCATTGACAGCTATATTATGTTCATGAACTTAATGAGAGGTAAGGTATTTGATATTATTGtactacttttatttttttggcttcCTTCTACTACTATTTACATTACGAGCAAACTAAACAATTTTTATTTGTCTGTGAATTAGCGAAGTGTATTCTGTgtaattctaaataaatgcagtTTGTGTA
>XM_039776687.1
AATACTTAAGAAGCTTTCCAATACCGTGCAAGCCTTTAGAGGAACTCTGTGGCTCTGCGAACATATTTTCTAATTGTATCACCAAAGAAACCTGGAAGACTTAAGGAGTTCAAAATGTCCATCGCCCAGGCGGCGGCCAAGGCCATGCTATCTGATGCCCTGCTGCAGGGCAGCCCCGGGATAAACCGGATCAGCCACCTGGAGCTGGAGCTTCCTCTGGACAAGGTCATCAAGTTTGTGTCAGTCGGCCTTCCGCTGCTGCTGGTGTGCATGGCCTTCGCCCGCGAGATCTCCCTGGGGCCTCAGATCAGCTGTTTCCCTCCCAGCAATTTCACCATCAAGCAGGCCAGCTATGTAGACACGTACTGCTGGGACTCTCTCATGCATCATGAGTTTGACAGCGCTGGGAACTTTGAGGAGCGCTCGCTCTGGGTTCACAAAATGTTTCCTTACTCTCTTCTGGCCATGGCGGTGTTGATGTACCTGCCGGCTCTGATCTGGCGCCAGCTCGTCATGCCCTCACTGGGCTCAGACCTGCTCTTCATTATAGACGAATTAGACATGTCGTACAACCGCTCGGTCCGACTGGCCCAGAACATTCTGGAGATGCGCCAGACCACTAAGAACCCCCTCACATTTCAGGCTGAACTGCAAAGGGCCAAGAAGAAGCGATACTTTGAGTACCCTCTCCTGGAGAGATACCTGCAGTGCAAACAGAACTCCTACTTCCTCGTTAGCATGCTTTTCTTGCGGGGCTTCCTGCTCCTGACCTTCATGACAGCTGCCTGCCTCTACCTGGCCTACTTCCACCTGTCCGCCTTCCTGCAGGACGAGTTCAGCTGCTTCGTCCGAACGGGCATGCTGCGGGACCAGAACTGGGTCCCCGAACTGGTTCAGTGCAAAATGATCGGCCAGTTGGTTTTTCAGGTAATAAGCGTGGCCAACGGTGCCATATACGCCCTGCTGGCTCCCATCGTCCTCTTCAGCCTGATCCGGCTCTTTGTGTGGGACACCACCTTCATCTCCGTCTACGAGCTCCTGCCGGCCCTCGACCTCATCAACCGGCGGCGACTCGGCTGCCCGCTGAACGACCTCAACGTCCTGCTGCTCTTCCTGCGCGCTAACGTGGCTCACCTGATGTCCTACGGGAAGGTGAGGGCCCTGTGTTCGCTGGCGCCGCCGCAGGTGGGCAATGCCGGCGCAGGCCAGGGACTGAACGCCATGCTGAGCcaagaggagatggaggagcgCGAAGAGGCCGCGATGGAGCTGGCAGAGGCGGTGGAGGAGGCCAAGGAGGAAGGGAAGTTCAACCTAGTAGACATCATGACCATTCTGGGAGCGGCGCAGGGGAGAGTGGTAAACTGCAGCGAGACGAGGCCTCTGGTGGAGGAGAATATGAGTCTCGAGCCAAACCACCAGGGCTACCATGAGTTGAAGGAGACTGCACCATTTAGTCATTACTAGGCCTCCTATGGACTGAATCAATGTGATAACAATGGGGGGGTTGGTACAGTAGATTTTCAGGAGTACTGTATCCACAAAGACTGTGGACATCAATCAAGGGTTTCTGTGgtctgaagacaaaaaaaacaaaactcttTTGGAATTACAGGGCAAATTGTTCTGGCTAGAAATGTCAATGTATTTGGAATTGTCAGTTTTCAGCATGTGTGCATCTGTAGCTGCCACAGACTTTCTTTCTGTGTCCTACTGCGGTCCCATGTGTTGTTTAGGAGGCCAGCGGAGGCTAGAATTTGAAGGAGAGCACGCAAGAGAAAGTGGCTGTTGTAATTATGGTGAGAGAACACACAGCATAAGAGCAAAGTATaactacacacaaaaaaacacatttgtcatTGTGACTGGGTTAGACTGATCATTTGTGAGAGTTCTGAGAGTATGTACATCAattgagagacagaaagacattttcagtggCAGCTATAGATTCCATTGACAGCTATATTATGTTCATGAACTTAATGAGAGGTAAGGTATTTGATATTATTGtactacttttatttttttggcttcCTTCTACTACTATTTACATTACGAGCAAACTAAACAATTTTTATTTGTCTGTGAATTAGCGAAGTGTATTCTGTgtaattctaaataaatgcagtTTGTGTA

Function

symbol description
panx3 Predicted to enable wide pore channel activity. Acts upstream of or within cranial skeletal system development and ossification. Predicted to be located in gap junction and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including dermal bone; eye; heart; liver; and pleuroperitoneal region. Orthologous to human PANX3 (pannexin 3).

NR:

description
PREDICTED: pannexin-3-like isoform X1

GO:

id name namespace
GO:0005921 gap junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20857 PANX2_3; pannexin 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039776686.1 True 2618 mRNA 0.48 5 33010814 33020920
XM_039776687.1 False 2139 mRNA 0.51 6 33010815 33020920

Neighbor

gene id symbol gene type direction distance location
fez1 fez1 coding upstream 552497 32434959 ~ 32458317 (+)
crx LOC103357888 coding upstream 1104373 31901989 ~ 31906441 (+)
trnas-gcu_13 NA coding upstream 1201908 31808825 ~ 31808906 (+)
trnas-gcu_12 NA coding upstream 1203010 31807723 ~ 31807804 (+)
trnas-gcu_11 NA coding upstream 1203718 31807015 ~ 31807096 (+)
opcml LOC103394960,LOC103366991,LOC104930635,LOC102299579,LOC100703901,LOC101464466 coding downstream 90673 33111593 ~ 33503252 (+)
LOC120544785 NA coding downstream 331344 33352264 ~ 33352329 (+)
lim2.1 LOC103356037,LOC104955000,LOC104935109 coding downstream 1199643 34220563 ~ 34225105 (+)
bsx bsx coding downstream 1207700 34228620 ~ 34230777 (+)
LOC120544501 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172 coding downstream 1287977 34308897 ~ 34309654 (+)
G170466 NA non-coding upstream 615938 32394622 ~ 32394876 (+)
G170417 NA non-coding upstream 907597 32099253 ~ 32103217 (+)
G170410 NA non-coding upstream 929936 32078537 ~ 32080878 (+)
G170384 h3f3b,LOC107377396,LOC101073377,LOC107550302 non-coding upstream 1098402 31910912 ~ 31912412 (+)
G170365 capns1,LOC107700232,LOC107548486,LOC107655908 non-coding upstream 1178178 31830100 ~ 31832636 (+)
LOC120543793 NA non-coding downstream 81899 33102819 ~ 33103225 (+)
G170631 NA non-coding downstream 227109 33248029 ~ 33248381 (+)
G170643 NA non-coding downstream 606369 33627289 ~ 33735009 (+)
G170716 NA non-coding downstream 1212259 34233179 ~ 34236999 (+)
G170719 LOC104954996 non-coding downstream 1217226 34238146 ~ 34240070 (+)
pknox2 pknox2 other upstream 6475 32887581 ~ 33004339 (+)
robo3 LOC103364814 other upstream 195271 32712598 ~ 32815543 (+)
cfap58 cfap58,LOC102788841 other upstream 586785 32401922 ~ 32424029 (+)
igsf9bb LOC103357894,LOC103394972 other upstream 616284 32246928 ~ 32394530 (+)
G170409 NA other upstream 946084 32064167 ~ 32064730 (+)
G170735 hyou1 other downstream 1311494 34332414 ~ 34336348 (+)
G170775 dlg2 other downstream 1416040 34436960 ~ 34442150 (+)
G170896 NA other downstream 2019022 35039942 ~ 35040371 (+)
LOC120575607 NA other downstream 2062969 35083889 ~ 35087897 (+)
LOC120575668 NA other downstream 2301340 35322260 ~ 35324252 (+)

Expression


Co-expression Network