RNA id: unassigned_transcript_954


Basic Information

Item Value
RNA id unassigned_transcript_954
length 82
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-gcu_10
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 31805642 ~ 31805723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGaggtggccgagtggttaaggcgatggactGCTAATCCATTGTGCTCTGCACGCATGGGTTCGAATCCCATCCTCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230917 lncRNA upstream 91389 31713287 ~ 31714253 (+) True G170293
TU230915 lncRNA upstream 101801 31701745 ~ 31703841 (+) True G170291
TU230886 lncRNA upstream 116534 31618457 ~ 31689108 (+) True G170266
TU231005 lncRNA downstream 24377 31830100 ~ 31832636 (+) True G170365
TU231026 lncRNA downstream 105189 31910912 ~ 31912412 (+) True G170384
TU231057 lncRNA downstream 272814 32078537 ~ 32080878 (+) True G170410
TU231064 lncRNA downstream 293530 32099253 ~ 32103217 (+) True G170417
TU231120 lncRNA downstream 585528 32391251 ~ 32393356 (+) False igsf9bb
XM_039777068.1 mRNA upstream 104049 31696132 ~ 31701593 (+) True ckma
XM_039776960.1 mRNA upstream 193929 31602514 ~ 31611713 (+) True micu2
XM_039777922.1 mRNA upstream 208549 31552788 ~ 31597093 (+) True sptbn4a
XM_039777923.1 mRNA upstream 208549 31553493 ~ 31597093 (+) False sptbn4a
XM_039777838.1 mRNA upstream 296226 31495421 ~ 31509416 (+) False LOC120544216
XM_039778348.1 mRNA downstream 96266 31901989 ~ 31906441 (+) True crx
XM_039777471.1 mRNA downstream 441205 32246928 ~ 32394076 (+) True igsf9bb
XM_039777466.1 mRNA downstream 441205 32246928 ~ 32394076 (+) False igsf9bb
XM_039777469.1 mRNA downstream 441205 32246928 ~ 32394076 (+) False igsf9bb
XM_039777468.1 mRNA downstream 441205 32246928 ~ 32394076 (+) False igsf9bb
unassigned_transcript_953 other upstream 459 31805102 ~ 31805183 (+) True trnas-gcu_9
unassigned_transcript_952 other upstream 2730 31802831 ~ 31802912 (+) True trnas-gcu_8
TU230907 other upstream 125576 31677998 ~ 31680066 (+) True G170284
TU230881 other upstream 193958 31602527 ~ 31611684 (+) False micu2
XR_005636475.1 other upstream 296249 31480312 ~ 31509393 (+) True LOC120544216
unassigned_transcript_955 other downstream 1292 31807015 ~ 31807096 (+) True trnas-gcu_11
unassigned_transcript_956 other downstream 2000 31807723 ~ 31807804 (+) True trnas-gcu_12
unassigned_transcript_957 other downstream 3102 31808825 ~ 31808906 (+) True trnas-gcu_13
TU231056 other downstream 258444 32064167 ~ 32064730 (+) True G170409
XR_005636542.1 other downstream 596200 32401923 ~ 32420402 (+) False cfap58