RNA id: XR_005636444.1


Basic Information

Item Value
RNA id XR_005636444.1
length 2055
RNA type transcript
GC content 0.51
exon number 12
gene id gusb
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27718999 ~ 27746458 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTACAAAAAAAATTCACGTGAGGGACACGGCAAAGAAAACTCACGAGAGAACCGCGGAGATTTGTTCCTTTGGTACAGGATGGTCATACCTGCAAGGCTCGGTGCGTTTCGTGTTTTGTGCCTCTTTACTGTGTTTGAAGCGGTATGTCTGCTGGACACCGGCATGCTCTTCCCCCGGGAGTCTTCCTCCAGAGAGGTGAAGGAGCTGAACGGGCGGTGGGACTTCAGGGCTGACAAGTCCCCAAACAGGAACCAGGGCTTCGAGAAGGCTTGGTACAAAAGTCGCCTGGCAGAGACAGGCCCAGTGATTGACATGCCAGTTCCTGCCAGCTACAATGACATCACCCAGGACCCCACGCTGAGAGATTTCATTGGCTGGGTGTGGTATGAGCGAGAGGTGGTGGTGCCTGCCCGCTGGATCGCCGATGAAGGAACAAGAGTGGTTCTCAGAGTGGGAAGTGCTCACTATTATTCAGTAGTGTGGGTGAACGGGGTGAAAGTGACAGAGCATAACGGTGGCCATCTTCCTTTTGAGGCTGAAATCGGCAGCTTAATCCGCAAGGACCCAACTCAGCCATGCAGGATCACCATCGCTGTCAACAACACTCTGACTCTGGACACTCTTCCTCCAGGAAATATCCAGCACATGGACGACCGCACCAAGTATCCTGAtggtttttttgtgcaaaacaTCTACTTTGATTTCTTCAACTATGCTGGCATACATCGTTCTGTGTTGCTGTATACTACTCCTAAGGCTTATGTGGATGACATCACTGTGGTGACTGACTTCTTGGATAACACTGGTCTAGTCTACTACAAGGTGTCAGTCCAAGGTGCTGCCACAGCCACCCTGAAGGCCACTTTGATGGACAAAAATGGCCACTGCGTGGTTTCCTCCAGCGGGCCATCTGGAGTGCTCAAAGTAGTAGATGTCAATCTGTGGTGGCCGTACTTGATGCATGAGAATCCAGCTTACCTTTACTCTATGGAGGTTCGCTTAATGGCAACCGATGGCCGATCCACGTATGAGGATGTGTATACTCTACCAGTCGGCATCCGCACAGTCAACGTTACCAGCACACAGTTCCTCATCAACAACAAGCCCTTCTATTTCCATGGAGTCAATAAACATGAGGACTCTGATATTCGAGGTAAAGGCTTCGACTGGCCCCTGATTGTCAAGGACTTTAACCTATTGAAGTGGTTGGGGGCCAACTCATTCCGCACCAGCCACTACCCCTATGCTGAGGAGATCCTGCAGATGTGTGACCGCCACGGCATCGTGGTGATAGATGAGTGCCCGGGGGTGGGCATCAAAGACATTCGCAGTTTTGGAAACTCCTCCCTGACCCATCACCTGGCTGTCATGGACGAGCTTGTAAGTCGGGACAAGAACCATGCCTCTGTGGTCATGTGGTCAGTAGCCAATGAGCCGGCTGCAGAGATGCCCCCTGCTGACTTCTATTTCAAGACCTTGATAAAACATACCAAAGCTCTGGATCCAACCCGGCCTGTCACTTTTATTACAGACAGTAACTATGCCAGGGACAGGGGGGCTCCCTATGTGGATGTAATCTGCGTAAACAGTTACTTCTCCTGGTACCATGATCCAGGCCATCTGGAGGTCATCCCCATCCAGCTCAAAAGTCAGTTTGAGAACTGGTATGGAAAGTACCAGAAACCCATCATCCAGAGTGAATATGGAGCAGATGCAGTGGCAGGGATTCACAGTAAACATGGTAATGCCGGGGGTAAGAAGCTGTCTTTTCACTCTCCAGGATCCACCCGTGATGTTTTCTGAGGAGTACCAGAAGGCAGTCCTGCAGAGCTACCACAACGTGCTGGACCAGAAGAGGAAGCAGTATGTCATTGGTGAACTCATCTGGAACTTTGCCGACTTCATGACTGTACAAGGGATCACACGAGTGGTGGGGAACAAGAAGGGTATTTTCACCAGGGAAAGGCAGCCCAAAGCAGCAGCATTCATCCTGAAAGAGAGGTACTGGAGACTGGCAAATGAAACTGGCAGACTACCGGTTTGGACCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229524 lncRNA downstream 2873 27713939 ~ 27716932 (-) True G169255
TU229500 lncRNA downstream 18254 27668681 ~ 27701551 (-) False pigw
TU229497 lncRNA downstream 18254 27699376 ~ 27701551 (-) False pigw
TU229496 lncRNA downstream 18254 27700123 ~ 27701551 (-) False pigw
TU229510 lncRNA downstream 83786 27635596 ~ 27636019 (-) True G169241
TU229545 lncRNA upstream 19157 27749305 ~ 27749558 (-) True G169275
TU229565 lncRNA upstream 59908 27790056 ~ 27794788 (-) True G169289
TU229620 lncRNA upstream 202144 27932292 ~ 27932862 (-) False LOC120544024
TU229716 lncRNA upstream 317459 28047607 ~ 28054009 (-) False LOC120544668
TU229726 lncRNA upstream 432987 28163135 ~ 28203753 (-) True G169387
XM_039776774.1 mRNA downstream 21056 27693482 ~ 27698749 (-) True znhit3
XM_039776772.1 mRNA downstream 48403 27668770 ~ 27671402 (-) True pigw
XM_039778151.1 mRNA downstream 53069 27659196 ~ 27666736 (-) True ggnbp2
XM_039778281.1 mRNA downstream 61568 27637955 ~ 27658237 (-) True dhrs11a
XM_039777428.1 mRNA downstream 93839 27605381 ~ 27625966 (-) True LOC120543974
XM_039777630.1 mRNA upstream 1382 27731530 ~ 27746458 (-) False gusb
XM_039777627.1 mRNA upstream 1382 27731530 ~ 27746458 (-) False gusb
XM_039778500.1 mRNA upstream 70065 27800213 ~ 27873238 (-) True ca4a
XM_039778502.1 mRNA upstream 70065 27800213 ~ 27851219 (-) False ca4a
XM_039778497.1 mRNA upstream 70065 27800213 ~ 27811187 (-) False ca4a
TU229438 other downstream 200821 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1027575 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 1034849 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1140545 26574975 ~ 26579260 (-) False ammecr1
XR_005636485.1 other downstream 2814955 24655803 ~ 24904850 (-) False LOC120544362
XR_005636427.1 other upstream 200391 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 487095 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 584289 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 925009 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 1074237 28804385 ~ 28808430 (-) False atp5l

Expression Profile