RNA id: TCONS_00070546


Basic Information

Item Value
RNA id TCONS_00070546
length 3258
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_036031
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50727220 ~ 50733508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCACAAAAAAACAACCCTCCTCGCGAAGAGACATCAGCGCCGTGCCCGTCGCGCGCTCGGATTTAATTTCCAAGGCTTCGAGGGTCTCCTGCTGTCGCTTTTCGGGTGATTTCTGAAGACGGATCGGGATTGAACACCTGTGCGCGCTCATTAATGACAGCCTGAAGAACTGCTATGACAGGTAAACTAGCGGACAAGATCCCTATTACCATGAGCAGTTTAATCAACACCATACCTGACAGTCTCTACCCAGAAGAAGACATCCCAACTTCTATGAACATTTTCGCAAACCCGGACTCCATTTCGCACTACTCGCAGATGAATACAGATAATATCATGGACTTGGGGATGGGCGGCGAGAAGGGCAGCGGAGAAATTCAGTACGGCTCCGGCAGCTTCCAGTCTGGGCGAAGTGGGCAGACCGTCACCTACCTGGGCAAGTTTGCATTCGACACCCCTCCTTCAGGCAGCATCGGCGGCTCCGGCTGGTGTCCCGACAACAACATCATAAGCCTGGTGAGTGCAGGCATCCTAGGGGTGTCCCCTTCACCTGGAAACatcaccacccagacgtcttcaTCCAGCGGCAGCATGGGTGGCCAGTCTTCAGACATGGAGCAAGTATACGCACCACCCCTACCTGCCTACTCCACCTGTGGAGAAATATACCCAGAGCAGGTGACGTTCCACCACAGTCCGGCCACGTCCTCATCCTTGCCCTACCCGAGCTCTGACTACCACACCACCTCTAAACCAGGCATGGACGGCAGTCTCTTCTCCATGATCCCAGACTACAACCTCTTCCATCATCAGGGAGACGTAGGGGTGATGGAGCATAAACCCTTTCAAACCATGGACCCTATCAGGGTGAACCCGCCTCCCATAACTCCCCTCGAGACCATTCGAGCTTTTAAGGATAAGCAGCAGATTCATCCCGGCTTCCTCGGTGGGCAACAGCACGTTTCGCAACATCATCAACCCTCTCAGACACTAGCTCTCAAACCTATCCGTCCAAGAAAGTATCCCAACAGGCCGAGCAAAACTCCAGTGCACGAGAGACCACATGCCTGTCCGGCCGAGAACTGTGACCGGCGTTTTTCGCGATCCGATGAGTTGACGCGGCACCTGCGCATCCACACAGGACACAAACCCTTCCAGTGCCGCATCTGCATGCGGTCCTTCAGTCGCAGTGACCATCTCACCACACACATCCGCACACACACCGGCGAGAAGCCGTTCTCTTGCGAATTCTGTGGACGCAAGTTTGCGCGGAGCGACGAGCGAAAGCGGCACGCCAAGGTGCACCTCAAACAGAAGGACAAGAAACCCACGGACAAGGGCAGCAGTGCTGGGGCAGGGGGGAACCACACTTCTCCTCCCAGCTCCTGTGGGAGCGCAGGACCCAGCAGTACTAACATCATGACCGTCACCACTTGTGCATGAGATGGACTTGAAAAGTAAGACTGTGAGGTGAAAAAAAACCGAAGTTTTCTTTCTCCTCTTTACATACACTTGACTCTCTCCCTCTCACTATATTCATCCGGTTTCTATTGATTATGGTGGCGCATTTCTGTAGCCACTACTGTGGTAGGTCAAGTGAGTGGGGAGTAAGTGGACTTGGATGGGAAGCAGAGGGCGTCAAAGATGACAGTTCAAGCAGTCGGGTCAGTCCACAGAAAGAGCACTTACAGATGCAGCACAGTCAACTCTCAGCTCCGGAGACCAGAGCGTCTCTTCAGAGTTTAGGTCTACTTCTTGTATTTTGGTTcgttggatgaaaaaaaaaaaagtgcactttcATTTGCTTAATGTTTCGCAgtcttttttaaaatgattgttaattatttaatgtttctgtgttattgttgttgtttttcaagaGAATGTGccaaatgtatttaaatacagCAGATGATTTAAAAACGATATATTGTTTGTATTTACCTAATAACTTCGGTTCAGACATTAATTTGGGGAAAGCCTATGAGCTCTAAACGTGACGTTAAAAGTctgattatttacatattttgaaatCCGGATGACGTTTATTATCAGCGACGGACTTTCAGTGCAATaaggaaagaaaaacaacaacaaaaacaacaataaaacgcAGTCTGGCTCACTTTCACATGTTTACCTTCTGGGGACTTAATGAAGGCACGTCTTTGCCTTTATTAAGCGCGCATATAAGGGCCAAACACAATACGATTAAAAGATTTTGCCTTTCTGTTTTTGCTGCATGCACCTAGTGTCATGTCTAGTACTGAGAAGATTGCATCAGTCATGATCGACCTACAGCAATACGCATCCAACTCAAACCATGCAgagtgtcatttaaaaaaattgacctATTTTTATGTGAAAACTGTCCCTCTGTTGTCCTTATCGTCATTGTTTTACTGAACGGTTGCATTTCCTCATCCAATATTGTTCATGGGGTCCCTTTTTACGCACATTATATATTCAGCACGCATTtgaacacacatgtacacacaaacgAAATCAGCCAAAATTATGGTAATGCTTGCCTGCGAGCATCACCACTGGGCAGGATTGATCTTAGGAGtcattgttttgcatttttaccGGCTGAGGCCCTGCCTGCTATATGCATGCCATTCAAGTTGTTTTTGGATGGGAACAGTTCCGACATTTATACTGCTCTCAGGGGCAGCACCGTAATGTGGTATCTCCACGGTTACTCATATCCCGATCATGCCTAGAGATTCTGAATATTAACGACGAGAACGCGAGGGGGTTTTGTACAGATAATTTTACAAACATATTACTACATGTTTTATACTTGGAATGTACAAAGCGATGTCTTTCAGTATTACGATGTCTGTCTGtacacgtgtgtatgtgtgtgtgtgtgtgcgcgtgtataaatgtgtgcgtatgctaatgcacacacaaacacccgCATACTTAGATTTTACATTGACTGAATGTTGAAACAAAGggtgtgtttacatttttgttggctttttttctgttttcgaGACGTGTACATAGTGTTGAATGTttttttgtaagtgtgtgtgtgtgtgtgtgagagagaaagaatgagtgtgtgagtgcaGGAAAATCTGAGTACTGACAGTGTCAAATGTGATGCATTCTCCGGCATTTCTTCAAAGTCTTAAATATTAACTGTTATTAGTGCGAATTCTGACTTGCAGACACACTGAATGAtgtgtttaataaatgaataaacagtaaGATTATTTGctgaaaaaagcaaaacaaaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04625 C-type lectin receptor signaling pathway
ko05203 Viral carcinogenesis
ko05161 Hepatitis B
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040718-394 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in hindbrain; myeloid cell; optic tectum; and telencephalon. Orthologous to human EGR3 (early growth response 3).

Ensembl:

ensembl_id ENSDART00000127062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072291 lncRNA upstream 195032 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072290 lncRNA upstream 213187 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072289 lncRNA upstream 453742 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072288 lncRNA upstream 685405 50038691 ~ 50041815 (+) True XLOC_036024
TCONS_00072287 lncRNA upstream 1103506 49616496 ~ 49623714 (+) True XLOC_036019
TCONS_00070553 lncRNA downstream 245510 50979018 ~ 50986475 (+) False XLOC_036036
TCONS_00072292 lncRNA downstream 427098 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00072294 lncRNA downstream 848221 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA downstream 848221 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072295 lncRNA downstream 992138 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00070545 mRNA upstream 21568 50534948 ~ 50705652 (+) True XLOC_036030
TCONS_00070544 mRNA upstream 53814 50531709 ~ 50673406 (+) False XLOC_036030
TCONS_00070543 mRNA upstream 224977 50493095 ~ 50502243 (+) True XLOC_036028
TCONS_00070542 mRNA upstream 233567 50493095 ~ 50493653 (+) False XLOC_036028
TCONS_00070541 mRNA upstream 509305 50190742 ~ 50217915 (+) True XLOC_036026
TCONS_00070547 mRNA downstream 9467 50742975 ~ 50777750 (+) False XLOC_036032
TCONS_00070548 mRNA downstream 9529 50743037 ~ 50839564 (+) True XLOC_036032
TCONS_00070549 mRNA downstream 208732 50942240 ~ 50950546 (+) False XLOC_036033
TCONS_00070550 mRNA downstream 212871 50946379 ~ 50950549 (+) True XLOC_036033
TCONS_00070551 mRNA downstream 220268 50953776 ~ 50962889 (+) True XLOC_036034
TCONS_00070536 other upstream 908349 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 1346917 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 1622169 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 1994362 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070498 other upstream 2199674 48514551 ~ 48527546 (+) False XLOC_035995
TCONS_00070552 other downstream 233298 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070562 other downstream 1428353 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 1797429 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 2290031 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 2290171 53023679 ~ 53023764 (+) True XLOC_036065

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_04122649_04127014.mRNA True 1293 mRNA 0.56 2 CI01000050 4122649 ~ 4127045 (+)