RNA id: XR_005636656.1


Basic Information

Item Value
RNA id XR_005636656.1
length 1547
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120545332
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34928976 ~ 35412309 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACTTTGGCAAGACGCTGCTGCAGTCTGATTGGTTTCTCTGGTCATGTGATTTCAGAGAAATAACTCAGAGGCTGACAGACTGAGAGAGGTGAGGAGGTGAAGACTGAGAGCTCAGAGCTGCTGGACCTGCATCAACTAACAGAGAAACGGCTCAGAGGACTTAAAGCTGAGAGACAGACTGAGCACGCTCAGTTGCTGCTTCACCTGCACCGCCTCACACAGCTAATAGACACACAgAACCTTTCTCATCACATCAGATCACAGTTTCATTTAAAGTCAGCTTCTTCATTAGAGTCTGGAGTATCTGCTGTTGGCTGAGAACACGTGTAAAGATCATCAATCCAGAACTACCCTCCAGCCTAGAGATCATTTTGCTCAGTCAGGCCAAGTCCTAACACCAATAAGACAAACACCAATCTCCCAGACTGAAGACAGACACATTCaaaagatacagatacagatccTGAAGAATCCTCCATGGAAATGGCACCAACATTCAGCAAAGAACTGCCTTCTTTCCTTTCTGAGTTGTTGAACGATCTTCAACAACTTACAGCTAAATTCATTGAAATGATCGTCCAAAAATGTCCAATGTTGAGAGAGATTGTCAAAGGGTTTCAGGAAGTCAGAGAGATGCTGGGAGGACTAGACAGCCAGACAACAAGGATTATTTTAGGGATCTCAGCTGTCGGACTCGGGTTAGCTGGAGTTCCGTTCTCTGGAGGGGCTAGCTTAGTAATGATAGGAGCAGGAGCATTTTGTGCTGGGGAAGTTTTTGTTCAAGCTGCCATAAATAAGATGAGAGAAAACGGAAGTATGGAGAAAGTAGGTGAGCTGGGGAAAAGCTTCATGGAGATCATTGAACCGCTGAAGAACTTCCTGAAGAAAATAATAGCTCGGTCTGCAAAAGCTCTGCGAATCAAGCTGGAGGGGTGTCAGGAGACTCTTAAACCTGTGTCTCAGCTCATAGACATTTGTATAAAAGTCTTGTCTGAAGTTGAAACAGCAATGGAGACAATGGATAAAATGGATAAAACAGTGATGGTTGTTCAGAATGCAAATCAGACCCCTAACGAGGCTAAAATGATAGTAGAGGGAATCAAAGAGTCAGCTGATCAGTCTAAGAAGCTCGTTGATGGGTTTGAAAAGTTGAGGAGGGCAGCCCTACATTTTTTAGAAGCTGTCTCAGCTTTTTGTTGTTAGGACTTTGAGATCATGTAAGCTGCAGTGAGAAGAAAACTTCATGTTTAAAGAGCCCCTGTTATGCTTTTTGGGATTTTTTCCCATCGTTTAGTGTGGTAAatagttttttgtgtatgtagcCATGTGAAACAGACAGAGGAGGTGCAGTAATGGGCAATATGAGAAAGATAATGGGCCCTATTTAAACAATCTGATCATATGGTGTGAAGCGCCTggagcaggtgtgtttagggcgtgtccaaatccacttttgctagtttgacggtgtaaaaagggtccgtgcgccgggcgcctggttctaaagggttgttcttagtgtcttcattaatcagaggtgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245244 lncRNA downstream 16498 35380195 ~ 35385107 (-) True G180934
TU245241 lncRNA downstream 28192 35356242 ~ 35373413 (-) True G180931
TU245240 lncRNA downstream 43038 35356242 ~ 35358567 (-) False G180931
TU245231 lncRNA downstream 69597 35283314 ~ 35332008 (-) True G180922
TU245237 lncRNA downstream 88885 35312310 ~ 35312720 (-) True G180928
XR_005636666.1 lncRNA upstream 107635 35519940 ~ 35521940 (-) True LOC120545342
TU245261 lncRNA upstream 160667 35572972 ~ 35574625 (-) False G180944
XR_005636681.1 lncRNA upstream 216528 35628833 ~ 35631315 (-) True LOC120545354
TU245276 lncRNA upstream 238999 35651304 ~ 35691813 (-) True G180957
TU245226 lncRNA upstream 245776 35658081 ~ 35698388 (-) True G180918
XM_039779550.1 mRNA downstream 321213 35073125 ~ 35080392 (-) False LOC120545308
XM_039779554.1 mRNA downstream 321221 35036695 ~ 35080384 (-) False LOC120545308
XM_039779551.1 mRNA downstream 321229 35073125 ~ 35080376 (-) False LOC120545308
XM_039779552.1 mRNA downstream 347960 35036695 ~ 35053645 (-) False LOC120545308
XM_039779553.1 mRNA downstream 362122 35036695 ~ 35039483 (-) True LOC120545308
XM_039779576.1 mRNA upstream 277512 35689817 ~ 36035909 (-) False LOC120545322
XM_039779575.1 mRNA upstream 277512 35689817 ~ 35694698 (-) False LOC120545322
XM_039779574.1 mRNA upstream 277513 35689818 ~ 36035923 (-) False LOC120545322
XM_039779466.1 mRNA upstream 323054 35735359 ~ 35758865 (-) False LOC120545270
XM_039779467.1 mRNA upstream 323054 35735359 ~ 35758865 (-) True LOC120545270
XR_005636645.1 other downstream 362122 35037050 ~ 35039483 (-) False LOC120545308
TU245160 other downstream 379528 34986221 ~ 35022077 (-) True G180873
XR_005636644.1 other downstream 535693 34863490 ~ 34865912 (-) False pisd
TU245259 other upstream 159873 35572178 ~ 35574625 (-) True G180944
TU245228 other upstream 277449 35689754 ~ 36035900 (-) True LOC120545322
TU245221 other upstream 404485 35816790 ~ 35963593 (-) True G180916
TU245351 other upstream 902611 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 902611 36314916 ~ 36318463 (-) False G181004

Expression Profile