RNA id: XM_039779574.1


Basic Information

Item Value
RNA id XM_039779574.1
length 431
RNA type mRNA
GC content 0.60
exon number 3
gene id LOC120545322
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35689754 ~ 36035923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actgtCCTGCAGGATCAGGTGGTGTTGGCGGTGCGTCAGCAGCACGTTGCCATCGGCGACCAGGTGGTGACCCTGGGAGACGGAGACGAGGTTGCCATGGTACCCCCTCTCAGCGGAGGCTAGAGTCCCACGATGGCCGAGTCGGAGGAGCGGCGAGACGTCTTGAAGCTGAGCCGTGATTGGCTGTCTGTACAGGAAGTGGTGGACACCGTCAGCAGCGCTTCCTGTGGagccatttctgtttttatagGAACGACCCGGGAGGACGAGGTTGATGGCAGGAAGGTGATTGGTCTGGAGTACGAGGCATACGAGCCCATGGCCCAATCAGAGTTCAGGAAGCTGTGTGATGACATCAGAGAGCGCTGGCCAACCGTGACGCACGTCTGTGTTCACCACCGGCTCGGGTGAGACTCCGAGcgtgttgctat

Function

GO:

id name namespace
GO:0006777 Mo-molybdopterin cofactor biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636681.1 lncRNA downstream 58503 35628833 ~ 35631315 (-) True LOC120545354
TU245261 lncRNA downstream 115193 35572972 ~ 35574625 (-) False G180944
XR_005636666.1 lncRNA downstream 167878 35519940 ~ 35521940 (-) True LOC120545342
TU245014 lncRNA downstream 272523 35411987 ~ 35417295 (-) True G180798
XR_005636656.1 lncRNA downstream 277513 35401605 ~ 35412305 (-) False LOC120545332
XR_005636675.1 lncRNA upstream 15057 36050980 ~ 36051837 (-) True LOC120545349
XR_005636663.1 lncRNA upstream 30899 36066822 ~ 36070623 (-) True LOC120545339
TU245310 lncRNA upstream 84061 36119984 ~ 36120437 (-) False G180976
TU245312 lncRNA upstream 84061 36119984 ~ 36120437 (-) False G180976
TU245313 lncRNA upstream 84061 36119984 ~ 36126163 (-) False G180976
XM_039779550.1 mRNA downstream 609426 35073125 ~ 35080392 (-) False LOC120545308
XM_039779554.1 mRNA downstream 609434 35036695 ~ 35080384 (-) False LOC120545308
XM_039779551.1 mRNA downstream 609442 35073125 ~ 35080376 (-) False LOC120545308
XM_039779552.1 mRNA downstream 636173 35036695 ~ 35053645 (-) False LOC120545308
XM_039779553.1 mRNA downstream 650335 35036695 ~ 35039483 (-) True LOC120545308
XM_039779495.1 mRNA upstream 99135 36135058 ~ 36146319 (-) True LOC120545288
XM_039779501.1 mRNA upstream 159161 36195084 ~ 36209710 (-) True LOC120545291
XM_039779502.1 mRNA upstream 159166 36195089 ~ 36209263 (-) False LOC120545291
XM_039779500.1 mRNA upstream 159169 36195092 ~ 36209679 (-) False LOC120545291
XM_039779499.1 mRNA upstream 159170 36195093 ~ 36209710 (-) False LOC120545291
TU245259 other downstream 115193 35572178 ~ 35574625 (-) True G180944
TU245007 other downstream 254957 35037024 ~ 35434861 (-) False LOC120545308
XR_005636645.1 other downstream 650335 35037050 ~ 35039483 (-) False LOC120545308
TU245160 other downstream 667741 34986221 ~ 35022077 (-) True G180873
XR_005636642.1 other downstream 823906 34863490 ~ 34865912 (-) True pisd
TU245351 other upstream 278993 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 278993 36314916 ~ 36318463 (-) False G181004
TU245425 other upstream 537719 36573642 ~ 36576179 (-) False myo5b
TU245414 other upstream 646791 36682714 ~ 36698059 (-) False G181036
TU245418 other upstream 646791 36682714 ~ 36748618 (-) True G181036

Expression Profile