RNA id: XM_039779499.1


Basic Information

Item Value
RNA id XM_039779499.1
length 1586
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120545291
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36195084 ~ 36209710 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccctctctgcagaTATATAAACTGGTCTCTGCCTCCTCGGCATCACAGACCAACAACACAGACCAACAACACAGACCAACAACTCAGACAGTGTCTGTAGTCACCACGTCACCAAGCTTCAGGAACTTCAGATCCATTTCTCTGGACCTCTTCCTGGGTTAACCAGACACAGGGAGttatgtggaggattttccTGACGATCTGTCTGCTCTGCTGGAGCGCTGACGGACAAGTCAGAGAAGTGAGATGCAGAAACGAAAGTGATGAACCAGTGGACTGGTACATCATCTACAAGGCACCCAAACTGAATAACATCGGAACCACAGGTTtggaatatatttacattgatCCAAATGGGAAGAAGAAGGAGACCTTGACTACAGATCTTACCTATAAACCCATCAACCATCCTAACGGTGTCCTGGCAAACACCCTGCGGCCCATTTTTACCACATCAATGACAGACAACTTTGGATTCATCTCCTACAGCGACCAACCTCCAGGATGTAATGCTCAAGATAAGTTTGGTCACAGTAAAGGAGTTGTGATGATGAATAAAACCACAGGAGTCTGGCTCTTACACAGCGTACCACAGTTCCCTTTCCTAAGAGATCAAAATAATTTCTACCCACCCAGCGGAGTAAAGAATGCTCAGACGTTTATCTGTGTAACATTCAACTATGAAGAGTTCAACATGAtagGTGAACATCTGCTGGACATCAATGCTTTCACATTTGAAGATCATATTCCAAACAACTTCTATGAAAGCCTTCAGAAACTTAGGAGGACTGGAAATAACATCAGGAAGGAAAGACTAAATGGAGTCAGAACTCAGGACCTGACATCAGCAGGAAGAACACCGTTTCATAGCTTTGCTAAATACAAAATTGCAAaCACGATAATGGACACCGACCCAAAAAGATTTGAAGGAGATCTTTATGTCACTATTGCAAAGGAATACCAGACTAATGTGAGAGTCCAGACCTGGCCCTGCAAACAAGACGAACCATACTGCGTAACAAATCAACATCAAGTGATCAATATTGAATCTGTAAAAACTAATCTGGGTACTTGGGGGTCTGGTAATGATCATTCCAAGTGGTGTGTAGCTACAGATACAATTAAAAATAAGTTTCCCCTTTTGATCTGTATCGCTGATGTAAATAGAGCCCTCAGCCAATACAAAAGGCCGGGGGGGGCACTGTGCTTTATACATAAAGAGGCCAGTGAACTATTTAAAGGTCTTATTAATCAAACTGATGCTTGCTCCGTTAAGCGTCCCCGTCCCCGTGATCCTGCCTGTGACCCTGATAGTGAGTGATAGGAAGTACATTTTAGGGCTGGGAATCTGGTGGATGGAGCTGGTAAATAGTGATATGGTGAAGCTGTTTCTTGAATTAAAAAATCCAAtttaccaaaaataaaaaacatattaataAGGTACTTTTGATGGAATAGTTCAAGTTTGATCTGAGTGACTCTGGGTGAATATTTGGGTTTTATGTAACAGCATCGGGATACTTGTTGGAGTAGTTTGATAAATATTAATAGAGTGATCAATATTGATTGAGTAATAAATTGAT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245322 lncRNA downstream 16133 36159170 ~ 36178960 (-) True G180981
TU245313 lncRNA downstream 68930 36119984 ~ 36126163 (-) False G180976
TU245308 lncRNA downstream 68930 36121101 ~ 36126163 (-) True G180976
TU245307 lncRNA downstream 68930 36125443 ~ 36126163 (-) False G180976
TU245309 lncRNA downstream 68930 36125443 ~ 36126163 (-) False G180976
TU245343 lncRNA upstream 48512 36258222 ~ 36283807 (-) True G180996
XR_005636670.1 lncRNA upstream 66472 36276182 ~ 36281054 (-) False LOC120545345
XR_005636669.1 lncRNA upstream 66472 36276182 ~ 36281054 (-) True LOC120545345
TU245315 lncRNA upstream 91631 36301341 ~ 36305812 (-) False G180978
TU245316 lncRNA upstream 91631 36301341 ~ 36309949 (-) False G180978
XM_039779495.1 mRNA downstream 48774 36135058 ~ 36146319 (-) True LOC120545288
XM_039779547.1 mRNA downstream 156766 36016537 ~ 36038327 (-) True LOC120545306
XM_039779549.1 mRNA downstream 187208 36004714 ~ 36007885 (-) True LOC120545307
XM_039779089.1 mRNA downstream 208907 35973604 ~ 35986186 (-) True LOC120545102
XM_039779564.1 mRNA downstream 264446 35923353 ~ 35930647 (-) False LOC120545315
XM_039779490.1 mRNA upstream 134300 36344010 ~ 36353479 (-) False LOC120545285
XM_039779489.1 mRNA upstream 134300 36344010 ~ 36353479 (-) False LOC120545285
XM_039779488.1 mRNA upstream 134300 36344010 ~ 36353478 (-) False LOC120545285
XM_039779487.1 mRNA upstream 134300 36344010 ~ 36353478 (-) True LOC120545285
XM_039779484.1 mRNA upstream 249585 36459295 ~ 36475215 (-) True il7r
TU245228 other downstream 159193 35689754 ~ 36035900 (-) True LOC120545322
TU245221 other downstream 231500 35816790 ~ 35963593 (-) True G180916
TU245259 other downstream 620468 35572178 ~ 35574625 (-) True G180944
TU245007 other downstream 760232 35037024 ~ 35434861 (-) False LOC120545308
XR_005636645.1 other downstream 1155610 35037050 ~ 35039483 (-) False LOC120545308
TU245351 other upstream 105206 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 105206 36314916 ~ 36318463 (-) False G181004
TU245425 other upstream 363932 36573642 ~ 36576179 (-) False myo5b
TU245414 other upstream 473004 36682714 ~ 36698059 (-) False G181036
TU245418 other upstream 473004 36682714 ~ 36748618 (-) True G181036

Expression Profile