RNA id: XR_005636670.1


Basic Information

Item Value
RNA id XR_005636670.1
length 1766
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120545345
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36276182 ~ 36281054 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGGTCTGTGTTGTTGGTCTGTGTTGTTGGTCTGTGTTGTTGGTCTGTGATGCCGAGGAGGCAGAGACCAGTTTATATAtctgcagagagggaggaggacgCTCTGTGGTCACATGGTTTGGAAATTACAgacCACCGTAGACTTGCCTAAGAAACGAGCTTTATGCTGTGTGACGGACAGCGATTGGTTTTTGATGTAAAGCAGGCTGTGCCAACCCACGCGGCGGATTGTTTGGCTGGGGGAAGTCCCGCCCAGTTCCTGGAGGTCCCTGAGATGGGGACACTGATTGATGCAGCATACCACCTCTGAGCCAATGAAGTCGGCCTCCGGCTTAAATAGCCTGATTGATGGCAGCCCAGGGCAGCTGTCAGACCTCATTGAGAACTGAGAACTGTCGAGATGTATGAGAGTGGGAGGAAGTGGGCCAGGGGTTGAGCTTTGAAAACTGATCTCGCTCTCGCATGTAACAGGTTTGTCTTGTATAGTCAGttatgttccttttttttctacagCATCCATCAAAAAACAaattcctaaactcaaccgtagctttcttctcACGATAACACGCCAAGTCGCGATTACatgcgtgtatgtttatgtccGCTGTATGCAGCGTAACATACACGCGGATAACTCAAAATGCgtccagataacacgccacttggcttaaggaAAGTGCCCGTGTATATTTACGGGAAGTCCTGATGCCATGTTGTGCCTGACGTGCCGTGCATTCAACTCAGTCAACAGAGTCAACTGAAGTGAAAATGTATGAAACAGCGGTAacacttaaccctaaccctaactctaaccataacttgtcatgacaaaaacgaATGACACTTAAAAAGTGTTATGTcacaaacgtttatgacttgtttataatgttttatgacatgttcatgacagtgtcatgtcactcttatgtagaaaacttcaagttaAGTGTAACCAAAACAGCTCCTAAACAGATGTATGCTTCAACATGTCTGTCCTCTTCAGAAGAAGATGGAAGAACTTTAGAAAGAAAAGATCAGTGGTTGGAGGAGACCTTTCAGCATGTTGTCCAGCTGGAGGAGATCACCCTGAATGTTCATTCACTGTCCTCTCACGGCCACTTGGACTTCCTGATTAAGGAGATGGAAGAAAAAGGAGAcccagagaaggagagaaaactgGAAGAGATGAAAAATTAAATGGATAAAGACAAAGGAATTAAAGCAGGTTTGGTAAACTTGCAGCAGCAGTTAAAGAATCAAAGAACTAGATGAACTAGAATCActgagagcagacagctgtgtaGAAAACAAGGTCTACACTGGtgatcaaatgtgttttattatagttttatttagtgtaATGTTGATAAGAAAATTAAATGTAATCACCttttatatgttaaatgtgtaattcCTAGAAACAGCTCCCTCTGTGATGTAATGACTGTTTCTGGTTGTTCTTGTAGTTTCATGTTTAGTCACCAAAATGTACTTTTAGGgaacagtttgggacaacagcTCTGGATTTAAATGCAGTGAGGACCCCCCCCTGCTGTTTACTGTTGAGTACAGCAGCTCCCTCTATATCACAGCTATATATAGCTAGCTAACAAAAGGAGTCCTTATTTAGTGAGTCTGTGTCAGCTATTTCCTTCACTAAAACTAAAGGATCTCCACCACCAAAGGgtctttttaaatcttttgttGGAGCAAAAATCTACTAGAGCAACtcttgtggtggcaaatttttattttaaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245330 lncRNA downstream 38131 36187013 ~ 36238051 (-) True G180984
TU245322 lncRNA downstream 97222 36159170 ~ 36178960 (-) True G180981
TU245313 lncRNA downstream 150019 36119984 ~ 36126163 (-) False G180976
TU245308 lncRNA downstream 150019 36121101 ~ 36126163 (-) True G180976
TU245307 lncRNA downstream 150019 36125443 ~ 36126163 (-) False G180976
TU245315 lncRNA upstream 20287 36301341 ~ 36305812 (-) False G180978
TU245316 lncRNA upstream 20287 36301341 ~ 36309949 (-) False G180978
TU245353 lncRNA upstream 23962 36305016 ~ 36318463 (-) True G181004
TU245359 lncRNA upstream 29048 36310102 ~ 36311544 (-) True G181007
TU245363 lncRNA upstream 29285 36310339 ~ 36311544 (-) False G181007
XM_039779501.1 mRNA downstream 66472 36195084 ~ 36209710 (-) True LOC120545291
XM_039779499.1 mRNA downstream 66472 36195093 ~ 36209710 (-) False LOC120545291
XM_039779500.1 mRNA downstream 66503 36195092 ~ 36209679 (-) False LOC120545291
XM_039779502.1 mRNA downstream 66919 36195089 ~ 36209263 (-) False LOC120545291
XM_039779495.1 mRNA downstream 129863 36135058 ~ 36146319 (-) True LOC120545288
XM_039779490.1 mRNA upstream 62956 36344010 ~ 36353479 (-) False LOC120545285
XM_039779489.1 mRNA upstream 62956 36344010 ~ 36353479 (-) False LOC120545285
XM_039779488.1 mRNA upstream 62956 36344010 ~ 36353478 (-) False LOC120545285
XM_039779487.1 mRNA upstream 62956 36344010 ~ 36353478 (-) True LOC120545285
XM_039779484.1 mRNA upstream 178241 36459295 ~ 36475215 (-) True il7r
TU245228 other downstream 240282 35689754 ~ 36035900 (-) True LOC120545322
TU245221 other downstream 312589 35816790 ~ 35963593 (-) True G180916
TU245259 other downstream 701557 35572178 ~ 35574625 (-) True G180944
TU245007 other downstream 841321 35037024 ~ 35434861 (-) False LOC120545308
XR_005636645.1 other downstream 1236699 35037050 ~ 35039483 (-) False LOC120545308
TU245351 other upstream 33862 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 33862 36314916 ~ 36318463 (-) False G181004
TU245425 other upstream 292588 36573642 ~ 36576179 (-) False myo5b
TU245414 other upstream 401660 36682714 ~ 36698059 (-) False G181036
TU245418 other upstream 401660 36682714 ~ 36748618 (-) True G181036

Expression Profile