RNA id: XM_039779549.1



Basic Information


Item Value
RNA id XM_039779549.1
length 941
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120545307
representative True

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36004714 ~ 36007885 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AcctgagaagaagaaggagcaTAGACCTCTCTCCTCATCTGTCTGAATTAATGAATAAACTTAAATATCATGCAGCTTCATTCATCAGAGAGTTTGACAGCAGAGAACAGAAGATGAGACAGATTATTAGAGAGTTTAGGAAGATCGCTGATGAAGTCAGAAAGATGCAGGAGACAACAGATGAAGTCAGAAGAGTAGGAACTGGTGTACTAGGAGTCACAGCCCTTGGCACGCCGTTAGGCTTACTTGCAGGCGGAGCAGGAGTAGTAGCAGCAGAATCAACAGCACTAGCACTAGCAGCAGGAGGGGCAAgagtagcagcagcaggagcagcaggagcagcaggagcagcagtaATAGCAGCAGTAGGAACAATAGGAGCAGGACTAGCAGCAGGATCAGCCATTTTAGTTGCTGGTGTAAATGTAACAAAAGGGAGATTAGAGAGTGTAAGTATAAATAAAGTAGAAGAACTGGGGAAAGACTTCATGGAGATGGTTGAACCGCTGAAGAAGAACCTGAAAGAAATAAAGAGGACATGTGAGAAGTTGGAGAAAAGGTCAACTGAACTTCAGACTGGAATCACTCTGATAGACATGTTGGAGTTTCAGAGGAGTCTGTCTGAACTGGTAAGAAGAGGAGTATTGTCTGCTATGTGGAACATCTTCACAATCACTGCGACCCCTGAAGAGGACAGAAAGTTAACAGACTCCATCATCCAGTCAGCTGATCGCTGTCAGAAAGTTATCGATGAATTGGAGAAGATGAAGGAAGAACTCAAAGACTTCACAGAACAGTGAACATACACGCTGCAGTTTGAAGAAAGAACATTTCTGATCACATCAGATCACAGTTTGATTTCAagtcagcttcttcatcaacactTCAGGAGAACCAAGagacctggggcctgtttcacaaaaccaagataagggattaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU245208 lncRNA downstream 18543 35973595 ~ 35986171 (-) False G180916
TU245233 lncRNA downstream 19784 35978810 ~ 35984930 (-) True G180924
TU245291 lncRNA downstream 31808 35971085 ~ 35972906 (-) False G180966
TU245287 lncRNA downstream 32996 35957867 ~ 35971718 (-) False G180966
TU245290 lncRNA downstream 32996 35969604 ~ 35971718 (-) True G180966
TU245299 lncRNA upstream 11041 36018926 ~ 36019677 (-) True G180968
XR_005636675.1 lncRNA upstream 43095 36050980 ~ 36051837 (-) True LOC120545349
XR_005636663.1 lncRNA upstream 58937 36066822 ~ 36070623 (-) True LOC120545339
TU245310 lncRNA upstream 112099 36119984 ~ 36120437 (-) False G180976
TU245312 lncRNA upstream 112099 36119984 ~ 36120437 (-) False G180976
XM_039779563.1 mRNA downstream 15502 35923353 ~ 35989212 (-) True LOC120545315
XM_039779089.1 mRNA downstream 18528 35973604 ~ 35986186 (-) True LOC120545102
XM_039779564.1 mRNA downstream 74067 35923353 ~ 35930647 (-) False LOC120545315
XM_039779559.1 mRNA downstream 84593 35906321 ~ 35920121 (-) True LOC120545313
XM_039779560.1 mRNA downstream 92979 35906321 ~ 35911735 (-) False LOC120545313
XM_039779547.1 mRNA upstream 8652 36016537 ~ 36038327 (-) True LOC120545306
XM_039779495.1 mRNA upstream 127173 36135058 ~ 36146319 (-) True LOC120545288
XM_039779501.1 mRNA upstream 187199 36195084 ~ 36209710 (-) True LOC120545291
XM_039779502.1 mRNA upstream 187204 36195089 ~ 36209263 (-) False LOC120545291
XM_039779500.1 mRNA upstream 187207 36195092 ~ 36209679 (-) False LOC120545291
TU245221 other downstream 41121 35816790 ~ 35963593 (-) True G180916
TU245259 other downstream 430089 35572178 ~ 35574625 (-) True G180944
TU245007 other downstream 569853 35037024 ~ 35434861 (-) False LOC120545308
XR_005636645.1 other downstream 965231 35037050 ~ 35039483 (-) False LOC120545308
TU245160 other downstream 982637 34986221 ~ 35022077 (-) True G180873
TU245351 other upstream 307031 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 307031 36314916 ~ 36318463 (-) False G181004
TU245425 other upstream 565757 36573642 ~ 36576179 (-) False myo5b
TU245414 other upstream 674829 36682714 ~ 36698059 (-) False G181036
TU245418 other upstream 674829 36682714 ~ 36748618 (-) True G181036

Expression Profile