RNA id: XM_039779417.1


Basic Information

Item Value
RNA id XM_039779417.1
length 5777
RNA type mRNA
GC content 0.44
exon number 30
gene id itga1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23356223 ~ 23406309 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCGTTTCTGTCTGTCCCGCTCTGACACGCAATGGAACAGAGCTCATCCCGAGTGGTGGAGTCAGTTTGAAACGGGACTTCAGACAGTTGAACTGTGGATGCTGCAGCACAGGAAATGCCTTGTGGACTCTTGTTAATCATCTAGCGATTTCACTTCTCTGGGGATCTCTCGTTTCTCTGAACTGCAGAAAGTCCGTAGGATAGGCTAACTGAAGCTACAGGACATCTATAGTGCGCCGGGATGCTCGGAATAAGTCATTTCACTTTGACAACAGCGGCAGTTGTTGTGCTGCTGCCATGTGTGCTGTCCTTCAACGTGGACCAGAAAAATGGTTTGTCGTTCAGCGGTCCACTGGAGGACATGTTTGGCTACACTGTCCAGCAGTTTGAGAACAGCGAAGGGAAATGggtttTGATTGGATCGCCGCTGTCGGGCCAGCCAGCTAAACGGACAGGAGACGTCTACAAGTGTCCTGTGGGGATGGGGGACAACACATGTGTCAAACTGGAGTTGCCTAGTAAGAATaatctttgtgtatgtgtaaACACAACAGTTCCCAACTTGCATGAAGTCAAGGAGAACATGACCATGGGAACCACGCTGGTGACCAATCCCAACGGAGGATTTCTGGCCTGTGGTCCTCAGTACGGCTACATGTGCGGCCAGCAGCAGTACATCTCAGGAGTTTGTGCAAACGTCAGCGATTCCTTCCAGATCCTCAACTCTGTGGCACCGGCCGTGCAAGAGTGTGCAAAGGAGTTGGACATTGTCATAGTTCTGGATGGATCTAACAGTATCTACCCCTGGACCAGTATAATCGATTTTCTGCGACGTTTCATAGAGAAAATTGTAATCGGACCTAAACTCTCACAGgtgGGGATAGTGTCCTATGGTGAGACTGTGACTCACCGTGTCAACCTGAGCCAGTTTGACAACACTCAAAATCTTCTGAAATTCGTTGATGAACTTCCTCAGCAGACCGGCTTCAAGACCATGACTTTCCTGGGCATTGATACTGCCAGGAGGGAGGCCTTCATGCCGGAGCGTGGTGCACGACCTGGGGTGAAGAAAGTCATGGTGATTGTGACTGACGGAGAGTCACATGACTTCCATAATCTGGACAAGGTCATCGGAGACTGTAAAGATGATGACATCGAGAGGTTTGGCATTGCTgTTTTGGGAGACTACAATCGTCAGAACAAAAGTGCGGAAGAAGTGCAAAAGTTTATCAAGGAGATTGCGGCCATCTCCAGTGAGCCGCTAAATGACCACTTCTTTAACGTGTCAGATGAGGTGGCCTTGTTGACCATTGTGGATGCTTTGGGAAGCAAGATTTTTGCCTTGGAAGCTACAACCGGCAATTTCACCTCCTCCTTCGGGATGGAGATGTCCCAAGCTGGGTTTAGTGCACATACTTCTAAAGAAGGTGTGTTACTGGGAGCAGTGGGAGCGTATGACTGGAATGGGACAGTAGTCATGCATACTGCTGGAGGAATAATCACTCCAGGGAAGACCCAGTTCTACGACCCAAAGACTGAGGCCGGGTACGAAGGACTTGCTGGGTACCTCGGCTATGATGTCCAGTCAGCATCCACCCCTGATGGAGTGCTGTACATCACAGGTGCACCGCGTTACAACCACACAGGCCGGGTTGTTATCTATCGTCTAAATAAAACGAACAACATTGTCGTTTCACAGATACTGAAAGGAGAACAGATTGGTTCCTACTTTGGCAGCGTCCTGCAGACTGTCGACGTGGATGGTGATTCCTATACGGATCTCCTCTTGGTCGGAGCTCCAATGTACATGGGCACAGAAAGAAATGAGCAGGGACTAGTCTACGTCTACAAACTCAAGCAGGACGGCCAATTTGAGCACGAGTTCACTTTAAAGCCAATCAATCAGTCCTGTTGTACTGCCCACTCAGCCAGCTGCACTAATAAAAATGAACCATGTGGTGCCCGGTTTGGTACGGCCATCGCAGCAGTAACAGATCTCAATCTTGACGGGTTTAATGACGTGGCGATCGGTGCACCTTTTGAGAACGACCACCGAGGGGCTGTCTACATCTATCATGGAGATAAGATGTCACTGAAAGAGAAATTTGTACAGCATATTCCTGCAGGTGGGGACAGTGAGAAGGTGAAATTCTTTGGGCAGTCTATACATGGAGTCATGGATCTAAATGGAGATGGAATCACTGATGTAACCATTGGAGGTCTGGGAGGTGCTTCACTATTCTGGTCCAGAGATGTTGCAGAGCTCCGTGCCAACATGACTTTTGAACCTGTTAAAATCAACCTTCAGCAGACTCAGTATCAGTGTGAACATGGTGGACGCAAATCTGCGTGTGTGACAACTGAGGTGTGTTTCGTCTACAATATCAAATCTGACAAGCAGGACGTAAACACTGCTGCAGAGATCCGCTACAATCTGACCCTGGATGCTCTGCGTGCAAAAGCCAGGGCCTCATTTATTGACTCGGATGATAAAAGTGATCGTAAAATTACCAGGAACTTCACcatcaaagacagagagagaaaatgtgtgAAAGAAACCTTCATGATGTCGGCCCGGCTTGACTTCCGAGACCCTCTCATGGTATCTTTAGAGTTTGGACTTGCTAATGAAGACCAAGGCCCTGTCCTGGATGAAAGCCTTCCCAGATCCATCAATAAGACCATTCCCCTAGTGGACTGTGGAAGCGATGAGAAGTGCATTGCTGACCTCTCTCTCAAAGCAGAGCCTAATGTCAAAAAAATGATGATCAGAGCAAACAAAGACAAGATTGACGTGAACATCAACGTTAgaaacagcaaagacaacgcATACAACACAAAAGTTACCCTCAGTTTCACAGCGAACATCAACTATGTTAAAGTAGAGCCGGAGAAGGCATGCACTCTGAATCACACAAAGGTGGAGTGTGCTGTTGGATATCCCTTCTTGGGAAGCAATGTAGAGGAAAATTTCAAAGTGAAATTTGAGGTAAATCCCAAACATATCCAGGATGTAATTCAGATCAATGTGACAGCTACAAGTGACAGCGAAGAGCTGGCTTCGACCCTGCATGACAACACAGTGCACATCTCCATCCCTGTGAAGTATGAAGCTGGACTCATATTCTCAGTGCGGCCTGTGGATCACCACGTCGAAGTAAAAGAGGGTGAACAGTATTCCAGTGCATTCAATGACACCGGGATGATCGGAGAGGAGGTCAACATCAGCTACACGGTGGAGAAGTCAGGTGATATGGTGTCTCCTCCTCTTGACCTTACAGTGAAGTATCCTCACCTGTCGCCTCGGCAGAACAACTTACTTTACCTAACACACGTCACCACCAGCCCACagGTGAAATGTGACGCAGAACGTTGGATCAACCCTCATAAAATTAACCCGAATACTATAACTCCcaatacaaagaaagaaacTCTCAGTGTCTTTCTGCTGAGCTGTGAAAACCTCAACTGTGCATCATTTAGCTGCTCTATCCCTGAAGCTACGATCAGTCAGGTCAACATTACATTCAGAGTGTGGAAACCTACGTTCATCAAGGGCGAGTTTACCAGCCTATACATGTTGGTGAATGCCACCCTGGCGATCAAAAACACAGACCTGTTTGAACTGAGCAGCAGCGACAGGACCAGAAGTGTGAAAATCCAGGTTTCGAAGGAGAGCTTAGGAGGAATCCCTATTtggatcatcatcatcagcatccTGATAGGACTGCTGATCTTAGCACTTGTCATCTTCGCTCTCTGGAAGATGGGCTTCTTCAAGAGAAAAAACAGGGACTACTCAAAGGAGGAAATGATGGACTGAGGTAGCCAGACATCCAGCAGCAAGCAGCTATGTGACCGACATCAGGTCACACAAAGTGACGGGCAGACTTTTAAACAGATAGTCGGACAGACGGAGGAGACGCCATAAAACCCACAGACACCTCAGTGCTACGACACAGTGGCGAAAACCAGGAAaacacagttacagttacagttacatacagtatacatcaAGTCAGGTCAAGCCGTTCAAGAAGCGAAGCAATGGAGGAGGAAGAAACCATTGCCTACCAGGCATCTGTTGGCAAAGTAGCATACAGCAGTTTTACAAAACCATAGGAGCTACAATAGCTGCACTCCAGTTCCAGAGGAAAAAAGTACTCAGGTTTTTCTGTATGGTGATCCAATGTCGGGTAAGCCACCTCACATTCACTTTCTATGTCATTACAGCAACAATGTCCAAAGGTCTATTCACTTCTAAGACATACACAATATGTGAACTTAATATGTGTTGGAGCAACACTGTCTGATAGCTTAGACTCTTGTTTTAAAGCTGATGTGCTTGATTAGTTTTATGAAACACTGTACCTTTTAGCATGTTatagtattttgtttttgtttggtatttttgctacatttttttacaatatAACATGGCACATCcttaatttttaaaatgttggctAAAGACACTGACCTGAACACAAGATTTGTTTTATGCAGAGGTGCAGTCtgactgcttttattttttttatacttttaatcTTAGTTAACCaattcaaaaacaaaagaaagattGGCCCAACTCAGATGCTAAAAGTGAAAATTAGTGTCACATTGGTTACTGAGGGATACAGAAAGCTGCGCCTGCAATATTCAAATCTTtgattgtactgtaaatataAGTAAATGCTCCAAAATGTAAAGCTTAAAAATGTACATAATTTTGTTTGATATGATTCATGTAATTTAAGAGATGTTATCCATAAATCAGTCAGGTCAGAGAAGATGATTTTGCTCAGGTGCTACAAGTATCATGAatgatgacattaacatttTAAGTATAAGAAAATGATCTGGCCTATCTCACAATGTCAAAGGCGAtgcaaatatgtaaatattgttatattttgatgagaaaattaaagtataattattatttactgaAGATGAGGGTTTGTAGCCACtagtttggttttatttgatTGAAAGCCTGGAGAATGACTGTGTTGAGGTGAGATACAACTGTAGCATATTTTGATTTCAACCTTTTTAGTTTGCAAAATGTAAGGTAAAATGTATTCCAATGTAGAAATATATATGTGTCACCAGCAGTTGCCATACAGTAAATGGGATTCACTGGTAGGTGGTTTGTAGTGTAGACAAGCTACATGtacacaaagcattagcatacTACAGGATCAGTGTCCCCACATTTGCGGTACACAGTACCTAACAAAGTTACTTTTTCaggttttctgtattttttttttttttccagaagtCCACAGCTACACAATGCATTAAAAGAGATTATATTGTATATTGGGGAGACTGGGTTTCTGCCTCTTTTTTCGACTTTCTCCCTCATTGTCATACAATAAAGTTGAGGGAAAACAGCAAGAAGAATAAGAGGCAGCTTTTTGAATTTTAAATACTCCTCGGCACTCACGCTTCACTGTTGACATGAAGCACATGTAATACATTGTATGTACAGAATGTGTAACTGTTGTAGGGCTACATCAGGTTTGTGCACGAGGGTGGAGTCACAAGTCTCCCTTTTGTTCACTTGAGGTGGTGGGATTGTTTTCTCAGTTCCTCTCTTAACTTCTGAGAGTAAAGCACAAAGTGAGAGTTGTGAGCTCCACCCCAGCCTTCTACACTGCTGTGAAGTCTTCATTGTAATGCACTGGTTTGTCAGACTGTATGCGTCCTCATCAGCACAGCAATGAACTGAATCTTATGTACAAAAATAAAGACTTTTTACAAAGTA

Function

GO: NA

KEGG:

id description
K06480 ITGA1, CD49a; integrin alpha 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636637.1 lncRNA upstream 8830 23336307 ~ 23347393 (+) False LOC120545237
XR_005636636.1 lncRNA upstream 8830 23336322 ~ 23347393 (+) True LOC120545237
TU239793 lncRNA upstream 20646 23331898 ~ 23335577 (+) True G177170
TU239791 lncRNA upstream 24975 23330150 ~ 23331248 (+) True G177169
TU239700 lncRNA upstream 174956 23180700 ~ 23181267 (+) True G177093
TU239805 lncRNA downstream 18535 23424844 ~ 23426902 (+) True G177177
TU239890 lncRNA downstream 129574 23535883 ~ 23536398 (+) True G177244
TU239954 lncRNA downstream 266953 23673262 ~ 23719373 (+) True G177284
XR_005636748.1 lncRNA downstream 528538 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 529692 23936001 ~ 23936681 (+) True LOC120545826
XM_039780716.1 mRNA upstream 43692 23301589 ~ 23312531 (+) True dhx29
XM_039780720.1 mRNA upstream 79135 23263472 ~ 23277088 (+) True plpp1a
XM_039780719.1 mRNA upstream 79135 23263666 ~ 23277088 (+) False plpp1a
XM_039780721.1 mRNA upstream 79135 23267344 ~ 23277088 (+) False plpp1a
XM_039780722.1 mRNA upstream 79135 23270081 ~ 23277088 (+) False plpp1a
XM_039780687.1 mRNA downstream 1063 23407372 ~ 23417210 (+) True kcmf1
XM_039779641.1 mRNA downstream 34674 23440983 ~ 23458605 (+) False hnrpkl
XM_039779643.1 mRNA downstream 34676 23440985 ~ 23458605 (+) False hnrpkl
XM_039779640.1 mRNA downstream 34681 23440990 ~ 23458605 (+) False hnrpkl
XM_039779642.1 mRNA downstream 34681 23440990 ~ 23456533 (+) False hnrpkl
TU239701 other upstream 171961 23182673 ~ 23184262 (+) True G177094
TU239589 other upstream 347411 23006267 ~ 23008812 (+) False klhl8
TU239380 other upstream 818886 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 831855 22496413 ~ 22524368 (+) True LOC120545252
TU239244 other upstream 1074060 22278880 ~ 22282163 (+) True G176753
XR_005636689.1 other downstream 34681 23440990 ~ 23458605 (+) True hnrpkl
TU239996 other downstream 317191 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 317857 23724166 ~ 23724245 (+) True LOC120546142
XR_005636816.1 other downstream 319665 23725974 ~ 23726052 (+) True LOC120546141
TU240416 other downstream 1296662 24702971 ~ 24711641 (+) True G177596

Expression Profile