RNA id: XM_039779643.1


Basic Information

Item Value
RNA id XM_039779643.1
length 2886
RNA type mRNA
GC content 0.45
exon number 15
gene id hnrpkl
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23440983 ~ 23458605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTGACAAGCGTAAGTAACAAACCCCCGGGAGTGTCGACGAATCGAGCTCATCGTCTTCTCTCTATGCTGAAAACGTGCAAACGTTTCTGGACGAGGAAACAGTGGAGCACCGCAGTGAACGTGGCTTTGCTGCAGCAGATCCGGGGTGAGGAGCCTGTTTGCATTCCACCTTAGTTGCAAAACAATGGAGGTGAAGCTTGAACAGCAGGACGAAGATATCGCATTCAGCAACACTGACACTAATGGTAAACGGCCAGCTGAGGACATGGAAGAAGAGCAGGCCTTCAAACGTTCTCGCAACGCAGATGAGATGGTGGAGCTGCGTGTGTTGCTTCAGAGCAAAAATGCCGGTGCTGTTATCGGAAAGGGTGGCAAGAACATAAAAGCTCTACGCACAGACTACAATGCCAGTGTATCAGTCCCAGACAGCAGTGGCCCAGAGCGGATCCTGAGTGTGAATGCCAGCATCGACACTATTGGAGATATTCTGCTAAAAATCATACCGACTCTAGAGGAGTACCAGCATTACAGTGGGATTGATTTTGACTCTGAGCTTCGTCTGCTGATCCATCAGAGCTTGGCAGGTGGCATCATCGGGGTAAAAGGTGCCAAGATAAAGGAGTTGAGAGAGAACACCCAGACCACCATCAAGCTGTTCCAGGAATGCTGTCCACACTCCACTGACCGAGTCGTCTTGGTGGGAGGAAAGCCAGAACGGGTCATTGAATGTATAAAAGTTATCCTGGAGCTGGTGTCAGAGGCGCCAATCAAAGGTCGTGCCCAGCCTTATGACCCTAATTTCTACGATGAGACGTACGACTACGGCGGTTTCACTATGTTATTCGAGGAGAGAGGCAGACGACCCATTGGTGGCTTCCCCATTCGTGTGCGTGGGGGCTTTGAGCGCATGCCCCCGGTTCGTGGCAACAGACCTATACCTCCCTCCAGAAGGGACTACGATGACATAAGCCCCCGTCGGGGTCCGCCACCTCCGCTGAGCAGAGGTGGACGAGGGGGCAGCCGAGCACGTAATCTGCCTCTTCCCCCGCCACCACCGCCAAGAGGAGGGGGAGACAGGTTCTCACATGGCAGCTATCATGGTGGCATGGACGACAGACCAAGTGACAGAAGAGGCCGAGGAGGAGACCGTTATGACAGCATGAGTGGAGGTGGTTATGGTGGCAGAGGCTCATACAGTGATATTGGAGGCCCAGTCATCACAACACAAGTCACCATACCAAAAGATCTGGCTGGCTCCATCATCGGTAAGGGCGGCCAGAGGATCAAGCAGATCCGCCATGAATCTGGGGCATCTATCAAGATTGATgaaccactagagggctctgAGGACCGCATCATCACCATCACAGGAACACAGGACCAGATCCAGAACGCCCAGTACCTGCTGCAGAACAGTGTGAGGCAGTACTCTGGTCGGTTCTTCTAGGAAGAGAGGAAGTGAAGAAGAGCGAAGCCATGCTGCCATACTGTTTCCTCCTATTCAGAGCCTACATTCCTCTGCTTTGCCTCCTCCCCTCACTATCACACACTACACCATCGACCTATAAATCACAATTTTTATTTAgaggcatttaaaaaaactttaagCTGTCAAACAGCAAAGGAGTCAACGTGTTTGTGTGCTGGTGTAATTCTTTTTATGAGATTATTGTGCCGTCAGTGGAGTAAactcatactgtgtgtgtgataacttTTGGTGTTGTGAGCTGCCCTGGGCCCTTATCTCATTCATTTCAATACAGCATGCAGAATGTAATCTTTTTGTAAGGAACATtatgtgaggattttttttctctctctaccccccccccccttaaatGTTTAAGCACACTCTAAATAAAGATGCATGGTTTCAGAATGGTTAAGGAACCATTGAAATAAACTTTAATTTTTACATAACATCCAATATCCTTTTCCACTTTCAAATTAAGTGCTTTTTGTAAGATGGGCTTTAATggagtagtttgacattttgagtaATACGCTTATTTATCTTTGTGCTAGGCTAACCAGCTGCTAGCAGTAACCTTCattaaagctgtggtaggcaATTTATTTTTGGCTTTATTGGGCACAATGTTTATTATAATCtctcagcatattgtaattcaaatggtCAGAGAAAACTAGACCTCTGCACATCATCTGGGCTCTGTTTTTAGGCTTTAGAAATCTAGCTATGATGGGAGACTTTGGTCTATCACAGGTCAtttaagagaaagagagggttCCTATTAGCTGTTCTGCGCATGCATTGCCCATGCCATATTGATGGGACAGGTggagctgcaggaagaggtctcCCTCAAATTCTGGCTTATTTTGCATtctacccactgcagctttaactcTTTACCAGATAGTGAATAAGcctatttctcaaaatgtcatcCTTTTGCTTTAAGTTGGGATACATGTGCCAGTGtgatataacaaaaaaaacatttttaagattttttgtttttcatagaaagacaaagagctgtataaagtgtgtatgtgtgtatatatttaaatagaAACAGTAATTTCATGAGTGGTTAGGTTAGATAGGCCCAAAATACTTAAAAGCCATAAGACtggtttggttttatttttctatgttatttgttttattttctgccaATTATGACTCGCTGTAATGCAACATCAATTTCTGATCTGTTTGATCCATTATTCCTTTTAATTTGAACAGTTTGGAAACATCTGTAAAGTTTTGAATAGGCTATTGGGTGCCGTTTGAAACGAGGAGCATACAGCTGGAGTCCATGAGTGTTTTCTATCCGGTCATATCTGTAGCTCTGTGTCTGATTATCTGTAGTACCTGCAGGTGTTTAGTAAATAAAGTCCGTGTCACAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239805 lncRNA upstream 14083 23424844 ~ 23426902 (+) True G177177
XR_005636637.1 lncRNA upstream 93592 23336307 ~ 23347393 (+) False LOC120545237
XR_005636636.1 lncRNA upstream 93592 23336322 ~ 23347393 (+) True LOC120545237
TU239793 lncRNA upstream 105408 23331898 ~ 23335577 (+) True G177170
TU239791 lncRNA upstream 109737 23330150 ~ 23331248 (+) True G177169
TU239890 lncRNA downstream 77278 23535883 ~ 23536398 (+) True G177244
TU239954 lncRNA downstream 214657 23673262 ~ 23719373 (+) True G177284
XR_005636748.1 lncRNA downstream 476242 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 477396 23936001 ~ 23936681 (+) True LOC120545826
TU240106 lncRNA downstream 477398 23936003 ~ 23936681 (+) False LOC120545826
XM_039780687.1 mRNA upstream 23775 23407372 ~ 23417210 (+) True kcmf1
XM_039779417.1 mRNA upstream 34676 23356223 ~ 23406309 (+) True itga1
XM_039779416.1 mRNA upstream 34676 23356226 ~ 23406309 (+) False itga1
XM_039780716.1 mRNA upstream 128454 23301589 ~ 23312531 (+) True dhx29
XM_039780722.1 mRNA upstream 163897 23270081 ~ 23277088 (+) False plpp1a
XM_039779644.1 mRNA downstream 155 23458760 ~ 23470507 (+) False LOC120545384
XM_039779646.1 mRNA downstream 194 23458799 ~ 23470507 (+) True LOC120545384
XM_039779637.1 mRNA downstream 13649 23472254 ~ 23478955 (+) False LOC120545381
XM_039779636.1 mRNA downstream 13876 23472481 ~ 23492497 (+) True LOC120545381
XM_039779638.1 mRNA downstream 14000 23472605 ~ 23478955 (+) False LOC120545381
TU239701 other upstream 256723 23182673 ~ 23184262 (+) True G177094
TU239589 other upstream 432173 23006267 ~ 23008812 (+) False klhl8
TU239380 other upstream 903648 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 916617 22496413 ~ 22524368 (+) True LOC120545252
TU239244 other upstream 1158822 22278880 ~ 22282163 (+) True G176753
TU239996 other downstream 264895 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 265561 23724166 ~ 23724245 (+) True LOC120546142
XR_005636816.1 other downstream 267369 23725974 ~ 23726052 (+) True LOC120546141
TU240416 other downstream 1244366 24702971 ~ 24711641 (+) True G177596
TU240496 other downstream 1786978 25245583 ~ 25305032 (+) False zgc:63972

Expression Profile