RNA id: XM_039779656.1


Basic Information

Item Value
RNA id XM_039779656.1
length 1683
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120545389
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23611737 ~ 23619177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatttgataACTTAGCAGATAAATAACAGAGCTGTGATTTATCTTCATTTCAGAGagCAAGTATGGACAACAGCTCCCAGCCTTCATATGAAGAAGCTCCAACTCGCTCCTGTCTCTTCAGAGCTGCTGGGCTGTTCACTGGAGACATGCATCTCTGCAAAGAGTGGGTGAAAAGACAGCTTGTGGTAATCCAACTGCTGGACTGGATTCTCCGAGGGGTGGCCCAGGTCATGTTCGTCAACAACCCTGTCAGTGGGCTCCTCATCACGGCCGGCCTCTTCCTCCAGAACCCTTGGTGGGCTCTGAATGGTCTTCTGGGAACCTTTGTCTCCACTGTGTCCGCCATGTTGCTGGGACTAAACAGGGAAGCCATATCAGCGGGTTTATATGGCTACAATGGAACCTTGGTCGGCATACTGATGGCTGTTTTCTCTGCCAAAGGAAGCTGGTACTGGTGGCTGTTAATGCCAAATATTTTCATGTCAATGTTGTGCCCGGTGGTCTCCAGTGCTTTGTCCTCAGTTGCCATCAAATGGGACCTCCCGATATTCACACTGCCCTTTAATATTTTGGTGTGTCTACATGTTGCAGCTACCGGAGCCAATCACCCCTACTTTCCAGAGGTAGATATCCAGCCAAATGACAATCTGCACCCTACTAATGACTCCAAGGAAAGTCTCAATTTCTCTCAGCTATTCCTGTCAGTGCCAGTTGGTGTTGGCCAGGTGTACGGCTGCGACAGTCCTTGGACAGGAGGTCTCATCCTTCTGGCCCTGCTGCTTTCCTCACCAACTATCTGTTTTCATGCCATGTGGGGCTCTGCTGCTGGCATGCTGTCTGGATTCGCTCTTGCAGCTCCTCACAAGGACATTTACTCAGGCCTGTGGGGATATAACAGCGCTCTATCCTGCATTGCCATCGGAGGGGTCTTCTATGTCATAACATGGCAAACCCATCTGCTGGCTCTGATATGTGCACTTTTCAGCACATACATGACTGCAGCCATCTCAAAACTGATGTCTGTGCTCGCATTACCAGCCTGCACATGGCCTTTCTGCCTGTCGACTctcatcttcctcctcattTCCTCCGAGATCCCAGCCATCTGCAGACTGCCTCTGTCTGTAGTCTCCTACCCCGAGGAAAACCGGCGCTACCAGAGACAATTAAAGGCCTCAGAGATGGTTCAGCACAGTCAGCAGCGGAACAGCCAAGAAGAGGCCACGCTGAAGGAGAATGGACGGCCAAATGTCCAGTTGGCAGTGGACAGGGGCCGCAGTGAACCTGTGTGATTAGAGGAGATGCTATTTTGTCCTGACATGAAGTGTTAAATCGTGGGAATTGTCGGAATAGTATGTTGATATATTCATTCTTGGTATTTTCTCTCTTACATAACAATATATGTTATATAAAATGGCTGGCATTGTAGTGAGACATATTTTCTAAATGGCAAACATTTTCTTATGCAGTATAGCTATTCTACACAACAGAGGGCAGCACTTCACAAGGAAAGATTGAACCACTGTTGTAATCTAATACTACTGAGGAAAAATACTGAGCAGATTTTAATGTAGGAATGTAATTATGTGTATTGTCTGCaataatatacattatattaaaTGTAGTCTTGTGGTGTTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239890 lncRNA upstream 75339 23535883 ~ 23536398 (+) True G177244
TU239805 lncRNA upstream 184835 23424844 ~ 23426902 (+) True G177177
XR_005636637.1 lncRNA upstream 264344 23336307 ~ 23347393 (+) False LOC120545237
XR_005636636.1 lncRNA upstream 264344 23336322 ~ 23347393 (+) True LOC120545237
TU239793 lncRNA upstream 276160 23331898 ~ 23335577 (+) True G177170
TU239954 lncRNA downstream 54085 23673262 ~ 23719373 (+) True G177284
XR_005636748.1 lncRNA downstream 315670 23934847 ~ 23935801 (+) True LOC120545825
XR_005636749.1 lncRNA downstream 316824 23936001 ~ 23936681 (+) True LOC120545826
TU240106 lncRNA downstream 316826 23936003 ~ 23936681 (+) False LOC120545826
XR_005636617.1 lncRNA downstream 350080 23969257 ~ 23971641 (+) True LOC120545017
XM_039779655.1 mRNA upstream 532 23594007 ~ 23611205 (+) True thbs4b
XM_039779653.1 mRNA upstream 28149 23577569 ~ 23583588 (+) True zgc:73226
XM_039779654.1 mRNA upstream 28149 23577571 ~ 23583588 (+) False zgc:73226
XM_039779636.1 mRNA upstream 119240 23472481 ~ 23492497 (+) True LOC120545381
XM_039778904.1 mRNA downstream 4933 23624110 ~ 23628080 (+) True zgc:122979
XM_039778906.1 mRNA downstream 9167 23628344 ~ 23631172 (+) True hwa
XM_039778909.1 mRNA downstream 19038 23638215 ~ 23644045 (+) True c17h18orf25
XM_039778908.1 mRNA downstream 19046 23638223 ~ 23646219 (+) False c17h18orf25
XM_039778907.1 mRNA downstream 19047 23638224 ~ 23646219 (+) False c17h18orf25
XR_005636689.1 other upstream 153132 23440990 ~ 23458605 (+) True hnrpkl
TU239701 other upstream 427475 23182673 ~ 23184262 (+) True G177094
TU239589 other upstream 602925 23006267 ~ 23008812 (+) False klhl8
TU239380 other upstream 1074400 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 1087369 22496413 ~ 22524368 (+) True LOC120545252
TU239996 other downstream 104323 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 104989 23724166 ~ 23724245 (+) True LOC120546142
XR_005636816.1 other downstream 106797 23725974 ~ 23726052 (+) True LOC120546141
TU240416 other downstream 1083794 24702971 ~ 24711641 (+) True G177596
TU240496 other downstream 1626406 25245583 ~ 25305032 (+) False zgc:63972

Expression Profile