RNA id: XR_005636680.1


Basic Information

Item Value
RNA id XR_005636680.1
length 463
lncRNA type intronic
GC content 0.39
exon number 2
gene id LOC120545353
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 35050006 ~ 35051183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AggtaatttgcataggctactgggAGAGACCGCACCTCCACAGGCATCCTCACCGATCCATGTGTTATAACCACACACCACCGCAATGGcttccacaagttcacctggaacctccaaatctatGCACCTTCGCCTGGGAGGAGAGACTATGGAGAGACTGCTGAAAAGGCTTCAGGAAGTTCTGCAACGTCAGCCTGTGGATTTTGACTATTTACACTTACACTGTTTTTAGTCATGAAATGGGACTTGTACCCTTTCGCATAGGCCAGTACACATTAACCCTCATATGCATTAtcattgcatttactgtaatttgttatgaaatagagtcaaattcttacttgaatatatttatttattattcactGAAAATGTATAGATTTAACTGTTTTGCTGGAGtccatactgtaaatgcatgtcatttcaaaaactgttAAGGATTAAAATCAGTACTACATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245134 lncRNA downstream 8315 35027724 ~ 35041691 (-) True G180861
TU245173 lncRNA downstream 22553 35026315 ~ 35027453 (-) True G180885
TU245169 lncRNA downstream 25984 35022445 ~ 35024022 (-) True G180882
TU245158 lncRNA downstream 27929 34986221 ~ 35022077 (-) False G180873
TU245159 lncRNA downstream 27929 34991139 ~ 35022077 (-) False G180873
XR_005636660.1 lncRNA upstream 11077 35062260 ~ 35065015 (-) True LOC120545336
XR_005636664.1 lncRNA upstream 34270 35085453 ~ 35093973 (-) True LOC120545340
TU245203 lncRNA upstream 213510 35264693 ~ 35544128 (-) True G180911
TU245231 lncRNA upstream 232131 35283314 ~ 35332008 (-) True G180922
TU245237 lncRNA upstream 261127 35312310 ~ 35312720 (-) True G180928
XM_039779553.1 mRNA downstream 10523 35036695 ~ 35039483 (-) True LOC120545308
XM_039779506.1 mRNA downstream 139939 34893172 ~ 34910067 (-) True wu:fi75a02
XM_039779540.1 mRNA downstream 157113 34890745 ~ 34892893 (-) False LOC120545298
XM_039779550.1 mRNA upstream 21942 35073125 ~ 35080392 (-) False LOC120545308
XM_039779551.1 mRNA upstream 21942 35073125 ~ 35080376 (-) False LOC120545308
XM_039779576.1 mRNA upstream 638634 35689817 ~ 36035909 (-) False LOC120545322
XM_039779575.1 mRNA upstream 638634 35689817 ~ 35694698 (-) False LOC120545322
XM_039779574.1 mRNA upstream 638635 35689818 ~ 36035923 (-) False LOC120545322
XR_005636645.1 other downstream 10523 35037050 ~ 35039483 (-) False LOC120545308
TU245160 other downstream 27929 34986221 ~ 35022077 (-) True G180873
XR_005636644.1 other downstream 184094 34863490 ~ 34865912 (-) False pisd
XR_005636643.1 other downstream 184094 34863490 ~ 34865912 (-) False pisd
XR_005636642.1 other downstream 184094 34863490 ~ 34865912 (-) True pisd
TU245259 other upstream 520995 35572178 ~ 35574625 (-) True G180944
TU245228 other upstream 638571 35689754 ~ 36035900 (-) True LOC120545322
TU245221 other upstream 765607 35816790 ~ 35963593 (-) True G180916
TU245351 other upstream 1263733 36314916 ~ 36320765 (-) False G181004
TU245355 other upstream 1263733 36314916 ~ 36318463 (-) False G181004

Expression Profile