RNA id: TU248156


Basic Information

Item Value
RNA id TU248156
length 2042
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G183214
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9325247 ~ 9327288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttattttgtcacttatttggagcagtaggctagttggagccggttacctccaggatctgtgctaggctaagctagctGTGGGGACGTCAGACAGAGTTAAAAcgcgcacggagatgagaagggtatgtatggacttatctaactctgggggatacggtgaataagctaaagtcccaataagtcgccgtgttccttttaacaaattaaacaaaaaatatgatGCACAACACATGAAAAATATATAGGAAACATATAGTCCAAACTTATCTATTTTCTTTCTAGCAGAAtggaaagtgttttttcatttttttcattaccGAAAGTGCCAGTGGCTGTAAATACTTCACCGGTAACTTCCAAGAACAAACAATGATCACCCGGGTTACCTCCTGAGAAACCCTGGCCCGGACTTCCTGCTGCGCAGCAGCTCTACTTATTAAAACGTTGTCTTTTTTTCAGAGGTTTGGGTTTCAGTAGCCAAACTTACAGTGACGTAGCCCCCTGGTTCCATCTCTGCCATTtcagagttgttgttttttacagttcCAGATCCGGAATACATTTCACCAAATCGCATCATCGTTTCTATTAATTTTAAAAGTATGGCAACCGAACAAGATGGAACTCGGCATTGGATTTTCATACAAACCTGAATGGAGTCGGGACCTGGCAGTGTTGTGACCAAGTCATCTTAGCTCAAGTAAGTCTCAAGTCAAGTCGAGAGGTTATGTCAGTTATGTCAACTTGAGTCCTTAGTTAAAGCgcaactctcgccaaaatgcaacctagggtcattccgaatgcgaatgaacggactccataggaggaaatggcattcttatatgaggcttCTTTTTCAACGACAAGGTCAAACTTGTTTTTCACCgacgacaaaacaacaaattatctttactctcctcccggttacgttgcattcggagtctcgactctttttgactggcaagatggcggcGAGCGGAAAAACAAACCGCTAAATTGAGCcgtttctttttagtaaactgtgGGTACACAACCAACGTTGTCGATGCTGAGtccatgtgtagagcccctggtgatacctcgagcaaagtctcatgttgggtcgagccttcttagggttttaaaaatagtgattttgatgcgatcacagtggtgcccctagcactcccattcaaaaggccatttgacccaaaacgATCGGTCAAATTGACCCGCATTAAATTTTTGTCTtctatcagaaaatatgggacgtagaagtgctgaaaatgtgtagaagaaaatttTTACATGacaaaatgtcgaaaaaagcaaaaaaaaaaaaaaaaagtgaaaaaaaaggttgatgGAAGGACTACAAGAGggttaaaagtggcgcttccgtcctaactatgcttttaaacgaaagtttgactcgggtacaatCAGAAAGAGACCCTAGGTtccattttggcgagagttatgcTTTAAAGGCAAGTCAGGTCCCAAATCCAGCTCGGTTACGTGTAGATGTAAAATCCAAAAAGGGATTCCCCGGTGGCACGGACGCAGCCACTGTGGCGGTTCTGGTCCCACTGATGAGGCTTCATCAGGGCTCTCTGATGTCACGCGTTGTCATCCAATCATGACAACCGCATACCGGGGAGCTTTTGGAGTCGTCCAATCGTGAGTCACAGTTTGCGCCGCTGCTGCCGCTGTTATAGCATACTTGATAGTTAAGACAGATACGTGACaacattaaatattattatttttaacagcTAACATTCAAAGAAATGATGAATACACGCAAGTCGTCCGAGTCGTCCTGCCTCAAGTCAAGTCTCGAGTCGTTAACTTACAAGTCAGAGTTTAAGTCTATTTTTTGTCGAGTCAAGTCATTTCTCTAATCCATATTTTAGGAGTTCCCACTTGGCAAGAGGAGGGTCAACATTAGAAGGACTACATTTCCCTACGGAGTTTGGTAGTGGCGGTGAGAACAGCACATGGTGGGGGCTACAGTTAAATATGACATGGTGTGAGAGAGAAGCTGTCCTGACATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248131 lncRNA downstream 91449 9233511 ~ 9233798 (-) True G183189
TU248122 lncRNA downstream 177147 9147089 ~ 9148100 (-) True G183180
TU248120 lncRNA downstream 190439 9134545 ~ 9134808 (-) True G183178
TU248119 lncRNA downstream 190711 9133536 ~ 9134536 (-) True G183177
TU248114 lncRNA downstream 196017 9126721 ~ 9129230 (-) True G183175
TU248155 lncRNA upstream 112 9327400 ~ 9328523 (-) True G183213
TU248217 lncRNA upstream 165891 9493179 ~ 9493404 (-) True G183256
TU248219 lncRNA upstream 174624 9501912 ~ 9505372 (-) True G183258
TU248225 lncRNA upstream 205258 9532546 ~ 9543226 (-) False G183263
TU248226 lncRNA upstream 205258 9532546 ~ 9543226 (-) False G183263
XM_039781916.1 mRNA downstream 37044 9155024 ~ 9288203 (-) False disp1
XM_039781915.1 mRNA downstream 37270 9155024 ~ 9287977 (-) False disp1
XM_039781917.1 mRNA downstream 125962 9155024 ~ 9199285 (-) True disp1
XM_039781918.1 mRNA downstream 126448 9155024 ~ 9198799 (-) False disp1
XM_039781668.1 mRNA downstream 301131 9020960 ~ 9024116 (-) True LOC120546609
XM_039782695.1 mRNA upstream 3196 9330484 ~ 9402765 (-) True LOC120547212
XM_039781893.1 mRNA upstream 133490 9460778 ~ 9470515 (-) True si:ch211-63o20.7
XM_039781894.1 mRNA upstream 133490 9460778 ~ 9470210 (-) False si:ch211-63o20.7
XM_039781895.1 mRNA upstream 139066 9466354 ~ 9470517 (-) False si:ch211-63o20.7
XM_039781901.1 mRNA upstream 178144 9505432 ~ 9527428 (-) False znf395b
TU248116 other downstream 191775 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 538030 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1300203 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1558861 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2291845 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 772315 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1174632 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1193429 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2046820 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3255881 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile