RNA id: TU248219


Basic Information

Item Value
RNA id TU248219
length 3461
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G183258
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9501912 ~ 9505372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTTTTATTGTAGTTTTTTCTCTATACACATTTTGTCTGAAGACTCGGAACAATGGTATCATGTTAGAAATGTAGTCTGAAATGTACACTGTATTCACAAGttccatttttttgtgttggattgacagagaaacgcacacacacacatgcatgtgcacaGTCACAATCACAGTTCAATCATCCACACACTCGTATGCATACATTATTACACCTCGTAATCAAACACGAATCAGCACAAAAACACTATTAAGATGCAAAATAATGGGACCTGCAAGTGGAGGGAAAATATCTTGAcggcaaaaacaaatgaacatttttatatttttttttcacccaagCAGGAACAGAATATTCTGTGACATGCACAGTTCATTTCATCCCTCTGCTCTTAAACAGTACATGAAGGGCTGGTGTCACTTAGACCTTCTTTCCCATCCCACAGTGGGATACACACACGTATTGGCCCTGCCAGTTTCCAGCTTCATGCACCAACGTACAATTGGACTAAAGTGACATGAACAGCTGTGCAAATAGGCCCAGGGTGGAGTAATGTTTGAGAACTGACCGGGGATTAGTTTCTCCTTACTCCTGAGTTCTGCATTCGCAAACACTTTAAATATATAGCTCCCTCATTTCTATAGGGTAAGTTAGGGACTGTACAAAAATTATTTGAAATCCCCAAAAAAATTTgatctttttgtttttccagacataaataatatataaaaatataataaaataaaaaggaagatCCCGCTCTCTGCTCTTGCTCAGCATCGCAATTTATTAAAGGAACTAACATTTCGAGAGAATTTAACATCTAACATTTAACATCTAGTGTTTAAtatccagtggtgtagtctacatgatacgcaggtatacccactaagaaagctccaagatttccatatacccacttaaaaatgccaaaTGACACGCAACACATAtgttccattatatttttgatatatttttaattatcatctgagtttttcttcttcacataaataaaggtatttccaccgtaaattggtgcagtGTATCCAAATACAGggaatgaagtcgttgatgccTTAAAACTTCCTTGgagaggacacccagaccccccactatgaaaTGGCCCCCCTcttccccaaaggcagattctggccaatatacagttcagtatacccactacaatacattagactacaccactgttaATATCTACCTTTTTCAAGTCCGGTGTGATATTTTAACACACTTGCATCTAAGAATTGTTGGCTGTGCAAATTTTTTCTTCGGAAAGatcttttgttttaaattgagTGGCAGTGATATTCCACATTGTGTAATTTGTCGAAAAATTGGCAATTTATAAATCCACTTCTAAGGTGCACATTTATGGCAATAAACATTGTTCTTCGAGTCACATATTATGGGTTAAATTAAGGTATAATTAATTGTCCTACAATTTTTCACACTTTGCTTTCCTTTAGCTTTTAacagtgaaattattttttgagaTATTGGAGGGAGGGTGCTGTTCAATGGGAGggtccaaaaaataaataatttataacACTTCAGGAGGCTCTGCTTTTCTAAAAAGTTTCAGCTACCCTCCCGACGCAATTCATTTTTGATATGATGAGCCATGAGCTGTCATACAGGCACTATTAATACtgtgaggaggaggaaaaataGACACTAGTTTCCTCAGGTTTTGTTAAAGAATTGTCATGATCTTTCAGTTTGACTCACATATTGAAATATCAGACATAAATtaagtgtatttgtatgtttgaCATCTTATGtcaattttttatttgactGTAATTGCAGAATGATGATCCCAAGTCAGTATCCAATGGGCAACAAGTTTGTTCCTCAAACACTAGAGGACAGTATAGTTCCACTGAAAGGAGCCTCGGGGAGTGTGCCAACCTGCTGCTCATTCCTTTGAGAGAAACTCATCACTTGCAAGGTTTACATTGagacacccccccaccccccgctgAATAATATAAACTCAGAACTAAGCGATGGGAACACGGCTTATCTTTGCGTAGGGATGCAAAGTTTCGGTGAGTTTGAAAGTTCAGAAAACCAATTTTGCACACATTGTGTTTAATTAATTAAGTTCCTTGAGCAGTAAATGAGATTCGTAGATCGGTAGCTAACAGTAATTTGTGCTTCATCATTGTCCTACCATCTGGCTGAACCATCTCGAAAGAAAAGTGCTGGTTCACTTCCAATTTGATTCTTgattctaataataataattgtgtatGATTTGTTTTGTCCCAAAATGCCATTTTTAAAAGGGGAAGCCTATGCAGTAACGAATGGGTCCATTACGTGAGAGCTTGACATTAGTAACACAAACTACAGAGTGCaacggaaaaaaaaagaacgaaaAAAAAGCCATCCACGCATGCATGAAAGTGCATTCAACATGAGTTTTAAATGTCACACCCTCAGGTCTCACCTCTGGTGAAAAACTTGCAGTGAACCAGTTTTCCAATCTCATTtagctccttttttttattattataacgacacacaaaaaaatatatccaATTGCACTTCTCTAATTCTTTTATTTGATAGAATGGTGTGAAAATATGCTTAATAAGAAGGACATCACGGTCAAAACATTCCTTGATACTTAGAGACACAAAAAGAGGCGCGGCGAGATTGGCGGAGGCTGTTCTTTTTCGGGTGATGACACGATTCAAATGCGGAGTGAGATGCCGAAAACATGATCTGGTTGAGGTAACTGGGAGCAGGGAGAGCGACGTAGATGCGTTACAGTTTGTTTTGCCTCCACACGCGAGTTACAGGGATGTTGTTGAACCTGCCGCTGCGGCTGCTCCTCATGCCCAGGTACTGCCTGAGCAGCTGGTTCACCCGCTTCTGACTGTTCCATTTGCGGGCAGATTTCCGGACGCCTATAAAGCCGCCGTAGCGCTTTTGTAGGGGCCTCACGGCCGGGCCGATCAGCTTCCTGTACGCGTGGCGCCCCCTCTGAAAGCCACCAAAGCGTTTGGATAAGGTGACGGCCCCTAAGGCGTCATCCTCGTCCCCTTCCGGCTGGCTGTCGCTCCCCGCGTTCCTCTCGTCCCTCGGCTTCCTCTCTGCGTCCGCCACGCTGAGATCCAGACCCCGCAggccctccccctcctcctcctcctcggatTCCGGCAGAGATGAGTCATACTGGGCACTGCGCGGCTCAAAGGGCGCCTCATCCCGCTCCCCCTCCTGGAAGGGCTCCACGGCCGCCGACTGCAGCAGTTCACTGTCAGAGTTCAGATCCAGAGAGGTGAGCTCCAGCTCCTGTCCCGCTCTCTTGAACAGAGCGTCTCGCTCCGACAGCGCGGGATAGTGCGATAGCTTGACGGCACGTCTACACACCTCCCATGTGAGCGAAGAGGAGACGTGACCCTCGCACTCCAACAAACACACctgcagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248217 lncRNA downstream 8508 9493179 ~ 9493404 (-) True G183256
TU248155 lncRNA downstream 173389 9327400 ~ 9328523 (-) True G183213
TU248156 lncRNA downstream 174624 9325247 ~ 9327288 (-) True G183214
TU248131 lncRNA downstream 268114 9233511 ~ 9233798 (-) True G183189
TU248122 lncRNA downstream 353812 9147089 ~ 9148100 (-) True G183180
TU248225 lncRNA upstream 27174 9532546 ~ 9543226 (-) False G183263
TU248226 lncRNA upstream 27174 9532546 ~ 9543226 (-) False G183263
TU248227 lncRNA upstream 27174 9532546 ~ 9543226 (-) True G183263
TU248264 lncRNA upstream 181350 9686722 ~ 9687119 (-) True G183296
TU248268 lncRNA upstream 203681 9709053 ~ 9715339 (-) True G183298
XM_039781895.1 mRNA downstream 31395 9466354 ~ 9470517 (-) False si:ch211-63o20.7
XM_039781893.1 mRNA downstream 31397 9460778 ~ 9470515 (-) True si:ch211-63o20.7
XM_039781894.1 mRNA downstream 31702 9460778 ~ 9470210 (-) False si:ch211-63o20.7
XM_039782695.1 mRNA downstream 99147 9330484 ~ 9402765 (-) True LOC120547212
XM_039781918.1 mRNA downstream 303113 9155024 ~ 9198799 (-) False disp1
XM_039781901.1 mRNA upstream 60 9505432 ~ 9527428 (-) False znf395b
XM_039781899.1 mRNA upstream 60 9505432 ~ 9527428 (-) True znf395b
XM_039782254.1 mRNA upstream 44632 9550004 ~ 9556929 (-) False paqr8
XM_039782253.1 mRNA upstream 44632 9550004 ~ 9556929 (-) True paqr8
XM_039782710.1 mRNA upstream 98116 9603488 ~ 9622711 (-) True stmn4
TU248116 other downstream 368440 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 714695 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1476868 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1735526 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2468510 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 594231 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 996548 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1015345 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1868736 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3077797 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile