RNA id: TU248537


Basic Information

Item Value
RNA id TU248537
length 633
lncRNA type intronic
GC content 0.44
exon number 1
gene id G183530
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10557487 ~ 10558119 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttgacttggccattctaacacctggatatgtttatttgtgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagcggtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagtttgattttggtttcatctgaccacagcaccttcttccacatgtttggtgtgtctcccaggtggcttttggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcagtatacgactgattgttgtcctatggacagagtctcccacctcagctgtaggtctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctcattgtatgagctgaaagtttagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248503 lncRNA downstream 323919 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 340361 10216351 ~ 10217126 (-) True G183492
TU248447 lncRNA downstream 379918 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 382132 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 491201 10064593 ~ 10066286 (-) True LOC120547073
TU248538 lncRNA upstream 7797 10565916 ~ 10566164 (-) True G183531
TU248541 lncRNA upstream 32961 10591080 ~ 10591338 (-) True G183534
TU248626 lncRNA upstream 196877 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 389697 10947816 ~ 10948114 (-) True G183616
TU248663 lncRNA upstream 405713 10963832 ~ 10964049 (-) True G183621
XM_039782068.1 mRNA downstream 108077 10398802 ~ 10449410 (-) False fam49a
XM_039782069.1 mRNA downstream 108077 10398802 ~ 10449410 (-) False fam49a
XM_039782067.1 mRNA downstream 108077 10398802 ~ 10449410 (-) True fam49a
XM_039782062.1 mRNA downstream 178360 10347000 ~ 10379127 (-) True fzd3a
XM_039782064.1 mRNA downstream 178360 10348141 ~ 10379127 (-) False fzd3a
XM_039781965.1 mRNA upstream 44351 10602470 ~ 10610625 (-) True LOC120546776
XM_039782864.1 mRNA upstream 103998 10662117 ~ 10666300 (-) True sf3b6
XM_039780998.1 mRNA upstream 135720 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA upstream 135720 10693839 ~ 10708835 (-) False pla2g7
XM_039781001.1 mRNA upstream 166351 10724470 ~ 10728525 (-) True glrx5
TU248535 other downstream 36077 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 456426 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1424015 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1770270 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2532443 8024715 ~ 8025044 (-) True G182977
TU248695 other upstream 815989 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2025050 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2402379 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 2635958 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 2648188 13206307 ~ 13215824 (-) False hmgn3

Expression Profile