RNA id: XM_039782069.1


Basic Information

Item Value
RNA id XM_039782069.1
length 1374
RNA type mRNA
GC content 0.48
exon number 12
gene id fam49a
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10398802 ~ 10449410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGGAACAGAGGGAGGGGTAAGTGCTCAGAGTGTTGTTGTCTGTCGCTGCTGGGGACAGACAGAGCTGGCCAAGGTCGGTGAAAGTACTGCTGAGACCAACATAACATCTTAAAAAGTACTACCCCAAGAGACATACAGagacaaagagaaagcGGATGATATAGACAGCAAGCCGGCGTCCTCCACCAGAGAAgGTTTGCTGGAATGGGTAACCTGCTAAAAGTCCTAACAAGGGATATAGAGAACTATCCACACTTTTTCCTGGACTTTGAAAatgcCCAGCCGACAGAAGGAGAGCGTGAGGTGTGGAACCAGGTGAACTCAGTCCTCCAGGACTCTGAGAACATCCTGACTGGCCTGCAGGCATACAAAGGAGCAGGCCAGGAGATCAGAGATGCCATTCAAAACCCCAGTGACTTCACGCTGCAGGAGCGAGCCTGGAACTCAGTCTGCCCGCTGGTCATCAAACTCAAGAAGTTCTACAGTTTCTCTCTCAGACTAGaggaggCTCTGCAGAACTTGTTGGAGTGCCTGACCTGTGCGCCCTTCACGCCCACTCAGCACCTGGAGAGAGAGCAGGCGCTGGCCAAACAGTTTGCTGAGATCCTCCACTTCACTCTGCGCTTTGATGAGCTCAAGATGAGAATTCCTGCAATCCAGAATGACTTCAGCTACTACAGAAGAACCATCAGTCGGAACCGGATAAACAACATGAATTTGGACATTGAGAGGGAAGTCAACAACGAGATGGCCAACAGGATGTCTCTGTTCTACGCCGAAGCCACACCCATGCTGAAGACACTCAGCAACGCAACCACAAACTTTGTGACAGAGAACAAGACTCTTCCACTGGAGAACACGACCGACTGTCTGAGCACCATGGCCAGCGTCTGTAAAGTCATGCTGGAGACCCCGGAATATTCGAGTCGTTTCAGCAGCGAGGACACGCTCCTGTTTTGCATGAGGGTCATGGTCGGAGTCATCATTCTTTATGACCACGTCCACCCCAACGGCGCcttcaacaagtcctccaagaTAGACATGAAAGGCTGCATAAAGGTTCTCAAGGACCAGCCGGCAGACAACGTGGAAGGCCTCCTGAATGCCCTCAAATTCACCACAAAACACCTGAACGACGAGTCCACTCCCAAGAACATCCGGACGATGCTCCAGtaatgttttgttctttttttttttatatatatatatatatatattaaagagGATCAATGCTCTGACCTCAAATAAGATGTATAtgtttacattatttaaaaagacTCGATGTTAATACTTTGTGTTATGGCATAGTCATTCCCTCCAAGCTATTGCAGAACATGTACCTTCtactttgcaaaaaaaaaaaaaaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248503 lncRNA downstream 165234 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 181676 10216351 ~ 10217126 (-) True G183492
TU248447 lncRNA downstream 221233 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 223447 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 332516 10064593 ~ 10066286 (-) True LOC120547073
TU248537 lncRNA upstream 108077 10557487 ~ 10558119 (-) True G183530
TU248538 lncRNA upstream 116506 10565916 ~ 10566164 (-) True G183531
TU248541 lncRNA upstream 141670 10591080 ~ 10591338 (-) True G183534
TU248626 lncRNA upstream 305586 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 498406 10947816 ~ 10948114 (-) True G183616
XM_039782062.1 mRNA downstream 19675 10347000 ~ 10379127 (-) True fzd3a
XM_039782064.1 mRNA downstream 19675 10348141 ~ 10379127 (-) False fzd3a
XM_039782063.1 mRNA downstream 20067 10348141 ~ 10378735 (-) False fzd3a
XM_039782751.1 mRNA downstream 169797 10226816 ~ 10229005 (-) True lft1
XM_039782756.1 mRNA downstream 190477 10178309 ~ 10208325 (-) True kif26bb
XM_039781966.1 mRNA upstream 5834 10455244 ~ 10610625 (-) False LOC120546776
XM_039781967.1 mRNA upstream 52510 10501920 ~ 10610625 (-) False LOC120546776
XM_039781965.1 mRNA upstream 153060 10602470 ~ 10610625 (-) True LOC120546776
XM_039782864.1 mRNA upstream 212707 10662117 ~ 10666300 (-) True sf3b6
XM_039780998.1 mRNA upstream 244429 10693839 ~ 10708837 (-) True pla2g7
TU248390 other downstream 297741 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1265330 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1611585 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2373758 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2632416 7761565 ~ 7766386 (-) True G182952
XR_005636937.1 other upstream 52510 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 71307 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 924698 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2133759 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2511088 12960498 ~ 13007868 (-) True LOC120547209

Expression Profile