RNA id: TU248662


Basic Information

Item Value
RNA id TU248662
length 342
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G183620
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10956948 ~ 10957289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgaaagactcattcacgccttcatctcctcccgactggactactgcaactcacttctcctcggcatcagctctaccaacatcaaccgactccaactggtccagaactcagccgcccgcctcattacctgctccaaatcctggcaccacatcactccagtcctaaaacaactccactggcttcccatttcccaccggatcacctacaaaatcctggtcctcacctataaagccctccaccatctggccccctcatacctcactgacctcctctccccttaccaaccctcacggtccctcagatccacctcagccggtctcctctccatccaaaagtccaac

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248657 lncRNA upstream 34893 10921825 ~ 10922055 (+) True G183615
TU248652 lncRNA upstream 44841 10903691 ~ 10912107 (+) True G183610
TU248637 lncRNA upstream 58335 10820464 ~ 10898613 (+) False G183597
TU248638 lncRNA upstream 108345 10820464 ~ 10848603 (+) True G183597
TU248580 lncRNA upstream 196150 10757234 ~ 10760798 (+) False LOC120547320
TU248669 lncRNA downstream 259664 11216953 ~ 11217156 (+) True G183627
XR_005637013.1 lncRNA downstream 264337 11221626 ~ 11260823 (+) True LOC120547013
TU248693 lncRNA downstream 410912 11368201 ~ 11368530 (+) True G183648
TU248700 lncRNA downstream 489882 11447171 ~ 11447408 (+) True G183655
TU248742 lncRNA downstream 588575 11545864 ~ 11548340 (+) True G183687
XM_039782874.1 mRNA upstream 181965 10770950 ~ 10774983 (+) True LOC120547319
XM_039782873.1 mRNA upstream 188966 10761564 ~ 10767982 (+) True LOC120547318
XM_039782740.1 mRNA upstream 200784 10751031 ~ 10756164 (+) True LOC120547237
XM_039782741.1 mRNA upstream 200784 10751965 ~ 10756164 (+) False LOC120547237
XM_039780914.1 mRNA upstream 212404 10734648 ~ 10744544 (+) True clmnb
XM_039782463.1 mRNA downstream 75138 11032427 ~ 11206367 (+) False flrt2
XM_039782462.1 mRNA downstream 188786 11146075 ~ 11206367 (+) False flrt2
XM_039782461.1 mRNA downstream 242855 11200144 ~ 11206367 (+) True flrt2
XM_039782464.1 mRNA downstream 244502 11201791 ~ 11206367 (+) False flrt2
XM_039782465.1 mRNA downstream 245380 11202669 ~ 11206367 (+) False flrt2
XR_005637057.1 other upstream 226166 10730505 ~ 10730782 (+) True LOC120547354
TU248549 other upstream 290476 10622736 ~ 10666472 (+) True G183540
TU248395 other upstream 844587 10111237 ~ 10112361 (+) False LOC120546402
XR_005637038.1 other upstream 1635520 9296061 ~ 9321428 (+) False LOC120547211
TU248071 other upstream 1919255 9020960 ~ 9037693 (+) False LOC120546611
TU249092 other downstream 2033387 12990676 ~ 13008411 (+) True LOC120546167
TU249176 other downstream 2188186 13145475 ~ 13150078 (+) True G183994
TU249175 other downstream 2249019 13206308 ~ 13247416 (+) False G183994
XR_005636930.1 other downstream 3067195 14024484 ~ 14121514 (+) False LOC120546742
TU249487 other downstream 3405052 14362341 ~ 14381187 (+) True G184231

Expression Profile