RNA id: TU249589


Basic Information

Item Value
RNA id TU249589
length 1374
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G184306
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14491099 ~ 14493568 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATACAaggtaaataaacaaatgattaCATAAAAGAACTGTCCTACATTCATTGATTATCTGAGGTTATCTTGGAATATATTTAGCAAATGTATTTCCAACACAATAGGGTTGCACAGAAAAAGCTCAGATGTTTCACACTTCTCTGTGCTGCACCAGCTGTAATTTATAGCACTTATTCAATAAGCACAtgtttttgtgttaaaaatgatTTGAGACAAAATCACAAGACAGGCATCAAAATAGCacccaaacaaacacaaaaggaAAGAGACAGCCTCATTTATCCAAATCATTGTtcacagttttattttaattcattttaaacttAGTGCGgctctttttttgttgtcaaaCCAGGAAGCACTTCCTCATAAAAGGAGAGAATAAAATGAACAATACTTCACCATATCCTTGCAGCcaataaacattttattaacAACATGATCACAAATACTCtggtgtattattttttttcttttttgtttacaaGATTGCAATATCCAAAGAAGTTTATTTCACCCTCGTTTTCAGGTCAgcgcctgttttttttttctcagctgtGTTGGAGAAAAGGataaaaaacctttaaaaaaaatgttccagGTTAGATGATGAGCATTTTGTTTGGATGTGCTTGCAACtgtatgtaaaacaaaaacaaatgaaaacaaacaatataaaatacaaaaggCTGACATAAACTGATGTGCAATTATAATTACCAACATTATCATTACTATCATATTCTCATGATCATTTTCCTCATTATTACCATTGTACTCACTACACTACTACAACTTGTATCAACATTACATTGACAATCGTAAAAATGATAGTAACAATAATGAAAATGATAGTAATAATAgccttataataataatacaaaatttaaaacaaacttgTGAAAAACGCAAAACAAACAAAGTCATTGGAATTTTATCCATTCTCCTTCAGGCGGAGGACAGAGGGGCAAACTgggcaaacaaacagacagaaaatgtAAGGAAATCAGAGGAATCAGTGCAAGAGTGTGCCCCATTCACGTCCAGACAAACAAACCGAATGTTACACAGACATGTGTGAGGTGTTACAGCAACGTTGCAGCGATGCTTCAACACGACAGCTGAACAGGATGAGTAGATGTCACAGTTTGGGCCTTCATTCCTGACTTCTCttactcctcctcttcctccctcctgctCAGGGCCACAGCAGCTGCTGCATGGGCAATGGTTCAAAAAGGTGGTTCATGTCGGGGAGTGGCTCTGAAAGATTATGTCGTGCTAATTCGACTGAGTTCATGTCTAATGGCATCGATGATTTCCTCCTTCACTTTGTGCAATTCACGAAACACCTCTTCCAAGATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249570 lncRNA downstream 52144 14432231 ~ 14438955 (-) False G184295
TU249571 lncRNA downstream 52144 14432231 ~ 14438955 (-) True G184295
TU249567 lncRNA downstream 58927 14427804 ~ 14432172 (-) True G184293
TU249565 lncRNA downstream 66252 14423153 ~ 14424847 (-) True G184292
TU249564 lncRNA downstream 73851 14416872 ~ 14417248 (-) True G184291
TU249640 lncRNA upstream 162089 14655657 ~ 14656247 (-) True G184346
TU249642 lncRNA upstream 173567 14667135 ~ 14667581 (-) False LOC120547045
TU249658 lncRNA upstream 178326 14671894 ~ 14677060 (-) True G184356
TU249666 lncRNA upstream 195738 14689306 ~ 14689940 (-) True G184360
TU249654 lncRNA upstream 206116 14699684 ~ 14702181 (-) True G184354
XM_039781332.1 mRNA downstream 102656 14387520 ~ 14388443 (-) True LOC120546407
XM_039781331.1 mRNA downstream 109922 14380014 ~ 14381177 (-) True LOC120546406
XM_039782071.1 mRNA downstream 112544 14360513 ~ 14378555 (-) False magl
XM_039782070.1 mRNA downstream 112544 14360513 ~ 14378555 (-) True magl
XM_039782356.1 mRNA downstream 131709 14335639 ~ 14359390 (-) True LOC120547016
XM_039782567.1 mRNA upstream 15880 14509448 ~ 14524171 (-) True lrfn5b
XM_039782477.1 mRNA upstream 31667 14525235 ~ 14529353 (-) True LOC120547074
XM_039781696.1 mRNA upstream 54470 14548038 ~ 14560460 (-) False znf410
XM_039781695.1 mRNA upstream 54470 14548038 ~ 14560460 (-) True znf410
XM_039782750.1 mRNA upstream 67839 14561407 ~ 14566531 (-) True cipcb
TU249319 other downstream 999971 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1023034 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 1275275 13206307 ~ 13215824 (-) False hmgn3
TU249614 other upstream 78187 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1295346 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1997082 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2336228 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 3268388 17761956 ~ 17762038 (-) True LOC120547356

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036437 False 2020 lncRNA 0.34 2 NC_007131.7 54435684 ~ 54440337 (+)
bowfin (Amia calva) AMCG00000345 True 2471 mRNA 0.52 10 CM030141.1 12356841 ~ 12364023 (+)