RNA id: XR_005637059.1



Basic Information


Item Value
RNA id XR_005637059.1
length 83
RNA type snoRNA
GC content 0.40
exon number 1
gene id LOC120547356
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17761956 ~ 17762038 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTATCGCTGATGATAATTTGGCTCCCTCTACTGAATACTATGAGGAGATTGCCAATGTTACCCAATTTCTGTCTGAGATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU250834 lncRNA downstream 70514 17687876 ~ 17691442 (-) True G185200
TU250736 lncRNA downstream 134096 17623124 ~ 17627860 (-) True tbpl1
TU250725 lncRNA downstream 165959 17593366 ~ 17595997 (-) True G185125
TU250724 lncRNA downstream 175464 17586251 ~ 17586492 (-) True G185124
TU250721 lncRNA downstream 183668 17565669 ~ 17578288 (-) True G185123
TU250888 lncRNA upstream 154103 17916141 ~ 17916528 (-) True G185236
TU250975 lncRNA upstream 295382 18057420 ~ 18058172 (-) True G185294
TU250976 lncRNA upstream 298351 18060389 ~ 18061348 (-) True G185295
TU251009 lncRNA upstream 375687 18137725 ~ 18140207 (-) True G185320
XR_005636852.1 lncRNA upstream 421922 18183960 ~ 18186587 (-) True LOC120546287
XM_039782815.1 mRNA downstream 60549 17697438 ~ 17701407 (-) True LOC120547287
XM_039782209.1 mRNA downstream 104080 17656654 ~ 17657876 (-) True LOC120546939
XM_039782086.1 mRNA downstream 130605 17624715 ~ 17631351 (-) False tbpl1
XM_039782084.1 mRNA downstream 130605 17624715 ~ 17631351 (-) False tbpl1
XM_039782085.1 mRNA downstream 130605 17624715 ~ 17631351 (-) False tbpl1
XM_039782776.1 mRNA upstream 2829 17764867 ~ 17766910 (-) True zgc:153284
XM_039782775.1 mRNA upstream 5121 17767159 ~ 17779910 (-) False LOC120547258
XM_039782774.1 mRNA upstream 5121 17767159 ~ 17778977 (-) True LOC120547258
XM_039782789.1 mRNA upstream 21701 17783739 ~ 17790479 (-) True sh3bgrl2
XM_039781500.1 mRNA upstream 52437 17814475 ~ 17824517 (-) True ccm2
XR_005637006.1 other downstream 925973 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 1244084 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1970398 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 3182787 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 3263586 14472201 ~ 14498370 (-) True G184299
XR_005637061.1 other upstream 360 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 695 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 2767 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 2884 17764922 ~ 17766640 (-) False zgc:153284
TU250885 other upstream 149232 17911270 ~ 17913036 (-) True G185233

Expression Profile