RNA id: TU251009


Basic Information

Item Value
RNA id TU251009
length 2456
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G185320
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18137725 ~ 18140207 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTATGAGACACTGCATGAAGACAAAAACGGACACTTGGGGGATGCCAGTACTAATCAATGTTCCACTGTGTCACAGCAAGTTGGCAACCTGAAAAATATCTCCCTTGCATATTATAGTAATTCAAAAAGAGCGTAAACTTAAATCACAGTCCCTAATATTTTTCCCATGGGAACTAAATGACACATCACacattcaaaataataaaaacacaattatatatattaaagtaTGCACTTCTAGCAGTGTATTACAGCCAcattagaaaaataaaaccacTATTACACACTTGCATGCTTATTAATAGTCATCTTTTTCAAGTAAAAAAACACGAGAATGGGCTAATTTCACAGTCGATAGTAAACCGTAATCACAAGGAACATGATCCAAATTATTAGAAATTAAAAGATTAATGATATGTAGCAAGAACAAGTTTgtggggttaaaaaaaaataatcttttgaaCAAGCTCGTTTACAATTTGTTACTCCTGAATCAAATACATGTCAACCAATGCTTATTTCCCCTCCACAACTTAGTCGCAAACATGTTCAATGCAACGGTGTGTATGATTGTGCTTTTTCTTTAACCATACAACCAAGTGAAGACTAAAGGGGGCCTTTCAAAATGTGCATGCAAgttaagtgtttgtttttttaaatcacatttcatAATCCTGAGGGGTTCTGCAAAGATGACAATGCAGTCTAAGACatgggagatttttttttttttttagttaacgCAACCTAATTAATCAATATAGTTTATCAAGGGTGAAACAAGTCCAGTATTATTAAATAGCACCTTGCTAGTACATACATTAGTACATTATTCTGAAGCCATGCCATTACCAGAGCTTGGGCCCCACTTACAAGGACCCATCTttacttaaagctgcactgtGCAGTCAAAATATCCTCATGAAGCAAAGCAAAGTTAAATCAGGTGAATGATCATCTATCAGTAACATTCAAGTTGTTTCATTAGATATTTGgcacaaaacaaaaaggtttgacctaaacttgtaatacaaaataaaattgaaaaaactACACAGTGCAGCTCAACAGTTCAGCCAAAAAATGTGCACATGTATTGGAGTATTTggtagtgttctctgtcctggaATGAAGAACCAGATATGTGTTGTAATAGGAGAGGGAAAATTTGAATTAGCCGAGTGTGGTGTTAACATACAGAATAAGACAGTAAGGACTTCCACAGTAGATAAAGTCCATTTGTCTTGACAGAAATACAGAGTAGAAGACAAACTCTGAAGAGACTCATCcaccttaattaaaaaaataaaaaaaaaaggatcaaaaTATTCAGAATTGTTACATAATTGTGcaatattctaaaaatgatcAATTAGCAGCCTCTGAAGACATCTGACAAAACACTTAAGACCGACACACACTAAAACAATATAAAGGctcggtgaaaaaaaaaaacaagttgctGGTAGCTTAGTTTTGCTGAGTTATATTTTATGCAATCTCAAGTTTGTAGCATGAGTGTATTGTCTGACCTCCCTCCCTAGACATGTACTGCATATCAACCCCCGTTTCTTTTCTGTGAGTTGGAATGCCAACTCCCATTCCTTTCctcacttcctcttcctcttcgtTGTTGCCAGTCATTGGAACTTTGACCCAGCCGTCTGTGGCCAGGCCGTGTTTCTTCTGATGTCTCTTGTAATTGTCCCAGTGGCCGGTGGTGTAGCCGCACTCCTGACAtttgtacggcttctctcctgtgtgccGGAGCATGTGCCGCTTCAGGTTCATGCTCTGGTTGCAGCTGTAGCTGCAGACGGCACACTGGAAGGGCTTTGCCCCCGAGTGCACCCGCTGGTGGCGCTTCAGGTTCGCCAGGTTCCCGCAGGCGTAATCGCACAAATGGCACTTGTAAGGTTTCTCGCCTGTGTGCACTCTGTGGTGGCGCTTGAGGTTGTCGAAGTGCGCTGAGGCATAGTCGCACTGTGGGCACTTGTACGGTTTCTCGCCGCTGTGAGTTTTCATGTGGCGTGCCAAGTGGTTTGGGTAGTGTGTGAGGAAAGGGCAGGCGGCGCAGGTGTACACCTTGTCGCTGCGCTCACCAGGGCTGTTGGGAGAGGATGAAGAGTCCTTAGTCAGCATTTCGAGGGTACACTTGGCACAAATCTGGGCTGAGGAGCCATCCTCGTCCTCCAGGACAATGCCACACAACCGGCAAGTGAAAGGGAAAAGTGAAGGGGGGAGGGCGGCACCGTCTGCTACGCCCGCTCTGGTCGCCCTGCTGCCGCCGCCACTTCCTGTGGTGTCCAGCAGGGGTGGAGGCTGGTGGCCAGGAGCTGGGTTAGAAGATGCtatgggtggtggtggtggtggtggtggtgatgatgctCCCTTTAAGCCATCAAAGGCTGATAGGTAGTCATTGTTTTGGGCTCCTAAAGTCAGGTTTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250976 lncRNA downstream 76377 18060389 ~ 18061348 (-) True G185295
TU250975 lncRNA downstream 79553 18057420 ~ 18058172 (-) True G185294
TU250888 lncRNA downstream 221197 17916141 ~ 17916528 (-) True G185236
TU250834 lncRNA downstream 446283 17687876 ~ 17691442 (-) True G185200
TU250736 lncRNA downstream 509865 17623124 ~ 17627860 (-) True tbpl1
XR_005636852.1 lncRNA upstream 43753 18183960 ~ 18186587 (-) True LOC120546287
TU251064 lncRNA upstream 178189 18318396 ~ 18318711 (-) True G185368
TU251074 lncRNA upstream 256681 18396888 ~ 18397170 (-) True G185376
TU251176 lncRNA upstream 496177 18636384 ~ 18636662 (-) True G185454
TU251180 lncRNA upstream 500214 18640421 ~ 18642958 (-) True LOC120546357
XM_039782035.1 mRNA downstream 12153 18102262 ~ 18125572 (-) False si:ch211-278j3.3
XM_039782034.1 mRNA downstream 12155 18102262 ~ 18125570 (-) False si:ch211-278j3.3
XM_039782033.1 mRNA downstream 12155 18102262 ~ 18125570 (-) True si:ch211-278j3.3
XM_039782307.1 mRNA downstream 36631 18062720 ~ 18101094 (-) True si:dkey-71h2.2
XM_039781502.1 mRNA downstream 257872 17825639 ~ 17879853 (-) True xkr6b
XM_039782042.1 mRNA upstream 1516 18141723 ~ 18172492 (-) True snx17
XM_039782043.1 mRNA upstream 1516 18141723 ~ 18172491 (-) False snx17
XM_039782041.1 mRNA upstream 37206 18177413 ~ 18182615 (-) False eif2b4
XM_039782040.1 mRNA upstream 37206 18177413 ~ 18182615 (-) True eif2b4
XM_039781476.1 mRNA upstream 58278 18198485 ~ 18203945 (-) True baalcb
XR_005637051.1 other downstream 69112 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 224689 17911270 ~ 17913036 (-) True G185233
TU250856 other downstream 371085 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other downstream 371085 17764922 ~ 17766640 (-) False zgc:153284
XR_005637056.1 other downstream 374917 17762733 ~ 17762808 (-) True LOC120547353
TU251109 other upstream 349609 18489816 ~ 18492858 (-) False LOC120546829
TU251114 other upstream 353101 18493308 ~ 18506188 (-) False LOC120546829
XR_005636828.1 other upstream 637923 18778130 ~ 18789415 (-) False abcd4
TU251888 other upstream 2422230 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 2737657 20877864 ~ 20877946 (-) True trnal-uaa_20

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034363 True 3345 mRNA 0.48 5 NC_007131.7 19423823 ~ 19432766 (+)
grasscarp (Ctenopharyngodon idella) CI01000310_01663192_01666886.mRNA True 1738 mRNA 0.54 2 CI01000310 1663192 ~ 1667160 (+)