RNA id: TU251180


Basic Information

Item Value
RNA id TU251180
length 2538
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC120546357
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18640421 ~ 18647401 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAATTGGACCTGGATAAGCAGCAGAAAAGGGGCGGATagattaatgaattaaaaattaTGAATTAATTTGTTTATATAAGTTTTTGCTAAAATCAACACTCAGTTGTTTTAAACTTTTAGTTTATAGGTGCATCAACATCCCAGACAGCCTGCAATCAGATAAAAACACCCTTTATAAGTAAAATGACTGCCTATGGCAGGCAAGTATAAGTAATTCAAACTTTTTAAATTAGGAATATGAATTCTATGCTTTTGAAGACTTTTTTGAGACCTGCAGACACCTGGTTAAAGTATTTTGGACGAGATTAAAAATTTAGTCAAGTAAAAATGGACATTATGTGATTACACGCAGCGTGAGGTGTCAAGGATTCCAGGGAAAAACTACAATAAACAATACCAAAAACAACAGGCTAAAACATAAAGTTAGAGCTAAAGTTAAAGCTGTCACCATTTGGCTGCTAGGTGTGTTATTTGTTTCCTGATGAGTGGCAGAGACACTGAACCTTCAACTCTGTGAGcataacaaataacaaaaatttaaaattttgggTTTCTTCTCATGAAACAATCAATGACGTTAGCTGCGTTGAAACCATTATGTCCCAGGTTCTACTCTGCATTATCACTGTCaagtcaaacttttttttttttatatccttTTTTGTTGCAGTGTTACATTGCTGTTTGGTTCAACAGAttacacacacgaacacacccAGCAGTGATGTTGGTGTGGGAGCTGAAATCAAACATGCGTGTCAGATGGAATAAAAACACGGACCGTCCTCTTTGTCTCGAACAGGTTTCCTTCGCACAACTTAAACAGTAAATGCTCATTTGAGCGGTGGAACTgaagtctgtgttttttttgcatgacACACTGGCATCTCCTATTATTTTAACCCATGGCTGTACTGGAAATAACACGCCAACATAAAGATTAAATACGGACGTCATCACATAGCCACCAAGGCAACCCTATCTCAGATGTTACACTGTCGTATTGAGGTTATGGTCACCTGTTAATGGCATTCAAAAAGTCCCTTAACATGTGATGTCGTCAATACAGCTGTATTGGAAAAGTCCATAATTTCAGCGTCAATGAGAATTAgatgcacaaaaaaaagttgtatgaTGTAATGCAATGCAATAAATACTACCTGACCAATGTTCATTAAACACCAATATAGCTTTTGGCATACTGAACATTATAGTGACACTTCTGCAGTTCCTAGAAGTGGTGGCGCTAAATTCTCTAACCTCATGCCTTTAGGGGAGAGACAATGTCTCAGCAAACTGTAGGATATTTATCTTTGAGATTCTGACATAGTCTGTGTGCAAAACTGAGCACACGCGATACGTAAAATAGAAAGGGTCCATCCTCTGGGGAGCACAAATGTGCAGACAAGATTTCATAGtagatttgtttgtttgattgtgATATTTGTACCAATTGGCCTATGAACAAATGGTAATGAGGAAAAAGGTCACATGGGGCTTTACAGCTTAAGTTTAAAAGTCTTCACAATTTCATAAGCAGGGATATTGTCAGAATTTGCATTTGTCAATTTTTAGGTCACTTCATTTTGCCTTCAGATTTTCATTTCTGAAAGTTTGCAGGATAACTGTGTAAGACCTCTAACGTGGTGAGACCAGTGATTACTATTCTGGGAAGGTTGATGTTTGCAAGTGGAGAATTACACAATCTTACAACTGAACAACTGTCTCCTCCTGTACTTAAGGTCTTTGACAGTGGACAGAATTTTGAGAGCAATTTTTAACCTGTCAACGTAACACTGCTTACCAGCTCCTGTATTGTCTGAATTCAATGATATTACAGTTACAACATACATTTATATAGGTATTTAGAAACAGAAAACTGaaggtttgttttaaaaagtaatttgcCATGTTTTGACTGGTTACTTACCTTGATTTCCCAGGTCTGATTCTGTAAAATATAAACCCTATGTGTGCAAAAGGTCTTATTGTCTTTAATCTTCTCCTGTGGATTCACAGGTCCCTGACAGATTCTTGGAGGTTGCCAAGATTACATTGAGAGAATTTTACATTGCCATTTCAATGGGCAAAGATCGTGATCCATCGTGGAAGAAAGCAATCTACAAGGTGATCTGTAAACTGGACAGTGACGTACCAGCTGAGTTCAAAAGTCATCACTCTGGATGAGAACCAACCAGAAGATATCCTGTGCCACAGTGGTTACTGTCACAATGTGGACTTACTTGTACCTCAATTagaaaactattttgtttttaatgaagaGCATGCTGCAGGTGAGTGACGTACATGACTGGACGTGTCCAGtctccacacatacagtatggcaGACTGATGTCTGACATTATCAAAGGCTTTACGGTTTTGATTGCATTATGAGGTCATTGGACATCATTTGCATTTTGCTATAATAACCATATTATATAGTAAcacattttgtattgtattgattGTGAAACCGTTTTATTGGTGCACACCAAACACTGTTTTTTGAGAAGCATTCTTTTTTGCACAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251176 lncRNA downstream 3759 18636384 ~ 18636662 (-) True G185454
TU251074 lncRNA downstream 243251 18396888 ~ 18397170 (-) True G185376
TU251064 lncRNA downstream 321710 18318396 ~ 18318711 (-) True G185368
XR_005636852.1 lncRNA downstream 453834 18183960 ~ 18186587 (-) True LOC120546287
TU251009 lncRNA downstream 500214 18137725 ~ 18140207 (-) True G185320
TU251181 lncRNA upstream 1418 18644376 ~ 18645172 (-) False LOC120546357
TU251193 lncRNA upstream 51596 18694554 ~ 18694796 (-) True G185467
TU251160 lncRNA upstream 52723 18695681 ~ 18698228 (-) True G185438
TU251213 lncRNA upstream 83914 18726872 ~ 18732810 (-) True G185479
TU251322 lncRNA upstream 261721 18904679 ~ 18907165 (-) False LOC120546223
XM_039782052.1 mRNA downstream 134223 18489815 ~ 18506198 (-) True LOC120546829
XM_039781466.1 mRNA downstream 325954 18295245 ~ 18314467 (-) False ptk2bb
XM_039781659.1 mRNA upstream 15951 18658909 ~ 18667719 (-) True LOC120546602
XM_039781660.1 mRNA upstream 17590 18660548 ~ 18667719 (-) False LOC120546602
XM_039781658.1 mRNA upstream 17590 18660548 ~ 18667719 (-) False LOC120546602
XM_039781663.1 mRNA upstream 26003 18668961 ~ 18680534 (-) True LOC120546605
XM_039781661.1 mRNA upstream 44849 18687807 ~ 18690956 (-) True LOC120546603
TU251114 other downstream 134233 18493308 ~ 18506188 (-) False LOC120546829
TU251109 other downstream 147563 18489816 ~ 18492858 (-) False LOC120546829
XR_005637051.1 other downstream 571808 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 727385 17911270 ~ 17913036 (-) True G185233
TU250853 other downstream 873781 17764922 ~ 17766640 (-) False zgc:153284
XR_005636828.1 other upstream 135172 18778130 ~ 18789415 (-) False abcd4
TU251888 other upstream 1919479 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 2234906 20877864 ~ 20877946 (-) True trnal-uaa_20
XR_005636822.1 other upstream 2370706 21013664 ~ 21143973 (-) False syne1a
XR_005636821.1 other upstream 2370706 21013664 ~ 21143973 (-) False syne1a

Expression Profile