RNA id: TU251109


Basic Information

Item Value
RNA id TU251109
length 2094
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC120546829
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18489815 ~ 18506198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGGAAAAGGACCAGTACCTGCCTCACCTTATCCTCATGATGATCCCACCCCACCGCCTGGAAGCTCAGTCCACACGCCGACGCAAGAGAGCGCTGGACACAAACTACTGCTTCTCaaacacagaggagaGCTGCTGTGTTCGCCGGCTCCACATAGATTTCCGCCGTGATTTGGATTGGAAGTGGATCCATGAGCCCAGTGGTTACGATGCCAACTACTGCTCCGGGCCCTGCCCTTACCTGAGGAGCTCAGATACAACACACAGCTCGCTGCTGAGCTTGTACAACACTCTGAATCCGGAGGCATCGGCCTCCCCCTGCTGTGTCCCTCAAGACCTGGAGCCCCTCACTATACTCTACTACTCTGGACGGACCCCCAAAGTGGAGCAGCTCTCCAACATGATCGTCAAGTCTTGCAAGTGTAGCTGAGAAGATGTGAAAGGCGAGGTAGTGCGGCAGGATTTTACTAGGTACTGACGAAAACCCATGCTCGTTGACTTTTGAACTCTTAGCTGTGACAATTACTAAAACTGACCCTGTGGCCTCATGGCTTAGATCTGAACACCACTCTGGAGGTCACATTTTTTAAGGATGcagattttcattttgtttcttgttttgtattttgttttcctcCCACTCTGGATGAGAAGTAGTTATTTTCAGTTCAAACCAAATGTTGCAATCATAGTATGATCTTAAAATATTTCCTTCTACATTTGTGAAGGTGGACAACATACTCTGCAGAGAGCCCTGTACAAATCTATCTGTGACAAAGTGGGAGCTGCTTCATTGACGATGACTGAAAGGGACTTATTTTGTGGTATATTTTCTGCTTCAGAGTTAAAGCAAATATTCCACAAAGTCATAGTCTCCCTGTTGTCAGTAGAGCAGCTTTCCCGTCTCTAGCCTTGGGATAATACTGTTTATAGTCACAAATATAGATTGTGCTCTACTGAATGGTCGAAGAGTCCTTTCAGGATGGATTTTACCTTGACTTAAGTTCCCTTCCTTTCAAACAGTGGACATTATCTTCAAACATAAAAGGAGAAAGGACAGACTTGCTGCTGTATCCAAAGCCATAGCTGTGGTCAGGGAAAAGGAGAGCTGAGAGAATGCCTGCTGGATTTGCAATGGAAAGtgaatgaacaaagaagttgagccaagcttttctttttttggccgGCCAGCAGCAATGGCCTTTTTTTTGCGGCTATTAGAATggatggaagaagaagaagggagtAGGGGACCTGATAGGAAGTGAAGAACTATGATGGAAACAAGCCATGAGCACAATGCCATTCACTGGAAGTTCTCATCTCTAACAGGTTCAAATTATTTATGGGACATCAAAGAATATACTGGAAAGGAACATGTGTTACGCAACAGGTTTTTATGGGATTTCTTTTACATTAATAGCAGATTTGATCCGTTATGCAACTTGTCATATAGTGATTGTTTCACTAACTGGGACAACGTTTGACGTAAACTAAGGGTACGGTTACATTTCCTTGTGATTCAAGAAGAATATGCTTTTTGTCCATATACAAATTAGTTGGACCTGTTGTATGTGATCCAGTATGTTTGACtgaagtcaactttattgtatTAAAAGGGGACCATCACCAGAAAGTTAAATCAGAGCACTTTTCTCCAGCATTAATAGGAAATGTCatgtcatttaaaatgtttacttcTTTTAAAAATCATACTCTCCTATCAACTCACCTGTGCATCACTCCATCCAGCTGACCAGGAATCGCATGTGTTCCCAAAAACACTGCTGTCTTTCATTCCCTCGGCTGCGTCTCAGTTTGTTTTAGTGCTCTTTTACAGTGTGAAGCCCTAatggaacaaaaaaaatgaagcgGGAGGGGAAAAGTCATTACATGACAGTGGCTGGATGTACAGTTAGACCTAATTTTTCTCTGAGTCAGGAGAACGATTCTGAATCCCTGTACTGTTTGACATTCACTCAGTCAGTCATCTTACCTTTAGATGACATTTAggtgacattttttttgcagtaaTATTGTTTGATTGACTTGTTGATCGTGATTgttattaaaaacacaacatgCAAAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251074 lncRNA downstream 92646 18396888 ~ 18397170 (-) True G185376
TU251064 lncRNA downstream 171105 18318396 ~ 18318711 (-) True G185368
XR_005636852.1 lncRNA downstream 303229 18183960 ~ 18186587 (-) True LOC120546287
TU251009 lncRNA downstream 349609 18137725 ~ 18140207 (-) True G185320
TU250976 lncRNA downstream 428468 18060389 ~ 18061348 (-) True G185295
TU251176 lncRNA upstream 143526 18636384 ~ 18636662 (-) True G185454
TU251180 lncRNA upstream 147563 18640421 ~ 18642958 (-) True LOC120546357
TU251181 lncRNA upstream 151518 18644376 ~ 18645172 (-) False LOC120546357
TU251193 lncRNA upstream 201696 18694554 ~ 18694796 (-) True G185467
TU251160 lncRNA upstream 202823 18695681 ~ 18698228 (-) True G185438
XM_039781466.1 mRNA downstream 175349 18295245 ~ 18314467 (-) False ptk2bb
XM_039781468.1 mRNA downstream 177976 18295245 ~ 18311840 (-) False ptk2bb
XM_039781467.1 mRNA downstream 179155 18295245 ~ 18310661 (-) False ptk2bb
XM_039781469.1 mRNA downstream 180245 18295245 ~ 18309571 (-) False ptk2bb
XM_039781470.1 mRNA downstream 181284 18293837 ~ 18308532 (-) True ptk2bb
XM_039781275.1 mRNA upstream 147883 18640741 ~ 18647401 (-) False LOC120546357
XM_039781659.1 mRNA upstream 166051 18658909 ~ 18667719 (-) True LOC120546602
XM_039781660.1 mRNA upstream 167690 18660548 ~ 18667719 (-) False LOC120546602
XM_039781658.1 mRNA upstream 167690 18660548 ~ 18667719 (-) False LOC120546602
XM_039781663.1 mRNA upstream 176103 18668961 ~ 18680534 (-) True LOC120546605
XR_005637051.1 other downstream 421203 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 576780 17911270 ~ 17913036 (-) True G185233
TU250856 other downstream 723176 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other downstream 723176 17764922 ~ 17766640 (-) False zgc:153284
XR_005637056.1 other downstream 727008 17762733 ~ 17762808 (-) True LOC120547353
TU251114 other upstream 450 18493308 ~ 18506188 (-) False LOC120546829
XR_005636828.1 other upstream 285272 18778130 ~ 18789415 (-) False abcd4
TU251888 other upstream 2069579 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 2385006 20877864 ~ 20877946 (-) True trnal-uaa_20
XR_005636822.1 other upstream 2520806 21013664 ~ 21143973 (-) False syne1a

Expression Profile