RNA id: XM_039781502.1


Basic Information

Item Value
RNA id XM_039781502.1
length 8025
RNA type mRNA
GC content 0.43
exon number 3
gene id xkr6b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17825639 ~ 17879853 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCTGCTCTTGGCACTCAGCTTGCAGCTGGAGGAGAGCTGCAGAGAGGGAAAACAACTGCGCAGCGGGAAATGAGATTAATGCACAGGTAACAATTGGTCGACCACAGATGGATGCATGAGTTACATATTAAATTGTTTGAACTTGTAGATTAGATTATTGTTACCAGGAGGGAATCGATCTGCAGTAGAGGGAAAACAAGACAAGATGTGCTGCGTCCATGGCGCCACTGGTGCGCTATCCGGGGACAGAGTGAGCGACGGCGACGCACTGACACCCCGCTTTTAGATGGCTCCAACATTTGGGGTGCAAAACAGGTGTCAGGGAAGTGTCGTCACGAACCCCGGAAGCCGGAGGAGGTGGGAACATCAGAGGGAAAGATGGCAGCGAAATCCGATGGTCGCGGGGTCGTCACCGGTTTCGCCCAGCTGCACAACCTGGATGAGGTGGTGGGGACGGGAGAGGACGACAATCGGAACAGCAGCTCATTCCACATCTGCCACTGCTGCAACACCTCGTCGTGCTACTGGGGCTGCCGGAGCGCCTGCCTGCATTACCTCCGGGGGAAGGGGAAGGGGAAAGATGCGGCGCGACCACCGCAGGAGGAGCGCCTCTGGCTGGACTGCCTGTGGATCATCCTGGCAATGCTGGTCTTTTTCTGGGACGTGGGGACCGATTTGTGGCTGGCCATCGACTATTACCACAAGCAGGACTTTCTGTGGTCAGGCCTGACCCTGTTCTTCGTGCTGGTGCCCTCTGTTCTGGTCCAGATCCTGAGCTTCAGGTGGTTTGTGCAGGATTACACTGGGGGCGGACTGGGCTCCGTGGAGGGGCTGAGTAGTCGTAGAGCAGCCAGTCTGCAAAGAGACAGGTGCTGCCGCCTCTCTGTCTGGGTCTGGCAGACCATCATACACATCTTTCAGTTGGGACAAGTGTGGAGGTACATCCGCACCATGTACCTCGGTATACAAAGTCACCGTCAGAAGGAGAACCAGCGGCGTTTTTACTGGGCTATGATGTATGAGTATGCCGATGTCAACATGCTGCGACTGCTAGAGACCTTCTTAGAAAGCGCCCCTCAGCTGGTGCTGCAGCTCTGCATCATGATCCAGAGCAACAAGGCTGAGTGGCTGCAGTGTGTTTCTGCCATGTCCTCCCTCCTGTCCCTGGCCTGGGTGCTAGCGTCTTACCACAAACTCCTGCGTGATTCACGTGACGACAAGAAGAGTATGAGTTATCGAGGTGCCCTGGTGCATCTGTTCTGGCGCCTTTTTACCATCTCCTCACGGGTGCTCTCCCTTGCTCTATTTGCCTCGGTTTTCCACATCTACTTTGGCATTTTTGTGGTGCTCCATTGGTGTGCCATGGCTTTCTGGGTCATCCATGGCGGCACCGACTTCTGCATGTCCAAGTGGGAGGAGGTATTGTTCAACATGGTGGTGGGCGTGGTCTACGTCTTCTGTTGGTTCAATGTACGTGCGGGCCGGGCGCGGTACAGAATGGTGGCCTATTACACAGTAGTACTGTTAGAGAATGCCATCCTCAGCCTCCTTTGGTATGCGTACCGTGACCCAGTCACCACTGACGCCTATGCTTCTTTTGCCCTCTGTGGCGTCTTCCTGTGCTTTGCCTCAGGTGTGGCCTGTATGGTTCTCTATTACGGGGTTCTACACCCCATGGGTCCCCGGCTGAGGGTGCTGGCCAGCTCCTGCTGTGCTGAGCTTCTGTGGGGCCTTCCATTACCCCCCGAGGCCGAGCCCATGGCTCCTACACCAGGGCCCCGTGGCTCTCAGGCCACCCCCACACGGGGTCTGGCAGGGGAACACGAAGAGTCAGATGAAACAGCCACAGACACCTGCCTTCCGGTTTTCCAGGTGAGGTCCACAGAGCCTGTGGATGCAGCTGGCAGGCCAATCCGGCCTGAGGGTCCTTTCATCAAGATAGACATGCCCAGAAAACGCTACCCAGCCTGGGATGCACACTTTGTGGATCGGCGCCTGCGTAGGACCATAAATGTGCTGCAGTACATTAGCCCGAACGCGGTGGGCATCAGGTATAGGGACGGTCCGCTTCTTTATGAACTCCTGCAGTACGAATCCTCCCTCTGAAGGCATCTTCTCCCTCAACTCTGTCACCTCCTATCACACAGTATGATGCACATGCCTTTCCTTTCTTTCACActgctcttcctcctctccagaTATTATCTcagctctctccttctctccactCTGATCATTCAATTTCCCTGCAGGAGAtgtgtgttagtaaaaggaAAGTCCGTCATGACAGTCTAAACACGCAGTCATGATTTATTTTTGGAAAAAGCATAcagtaaagagagaaaaatTTTAACCTACAGTATCTGatgtgatatacagtatacagaagTACCATATAAATCCCTCTACATTGATAGAGGAGGGTTCTGTATGAGTGTGTAGATAATATATGAATGTTTCATTATGAAATGTGTTTAATGCATTATATTGTATTGGTGATTCAACCTGTGAATACTTGTGAAGGGCATATTGTATGTCTCTGTGACATGGGACCGGCGCAAAGCCTGATGGGAATGATGGAGGAGAGTCCCAGAGGGGGCAGGTCTTTGCACATCCCAACATTTACTGCCATTGTATATGTCAATTATTGAAATGTATGATAATGTTTACCAAGTCCTTAGCCCATGAATTACAAAGCACTGAAATGTCTATCATGATACTGTAAATTGCAGAAAGGACACAATCAAAGATGTGTCTTAGAGAAGCATTTCAAAAATGGATTTTCCCTCTGTGAGCTTACGTGGCTCAAGTGTATCCTGGCTGTACTATTTTTGTTCAAAATCCTTAATTGTAATCGCATCATGTATGGAAGAAAAAAGAAGCACACTGACCTTCAATCAGTTCCACCCACACATTTAATTTCTACAGTGCATACTGCCCTCCAGTGGAGGCAAGCTGTAAGAGCACACCTTACTTGGTCATTTTTGCCAGTAGtacctgatttaaaaaaaacaaaacataatgaAACAAATGTAGAATGTAGTTGACATGAGCACAACATTTTCTAAATTGGTGGGTAGAAaattatgataaaaaaacattccaAAGCCTTTTTCTAAAAGATTGTAAGTGGTAAAGAGGGTAAAATGTGTGTTAACACATTTTAGTTTGAAGTGCAAAGACAGGCTTCAAGGAATCCTCCACCATTCCCTTCTGTATCCTAGAAAGTACTCCCTAATACAACctccttgttttgttttcctatcaACAAATGTTTTAGGTTGATTAATATATGCTTACTGGGTGCAAAGCCTTGTAATAAGTtcttgaaaaaaagacaattctGAGAAGATATTTCTATGCTATTATACTTCAGTGCATATTTGTGTCCACATTTATAGTCATTGACATAACTATATTTTGCCAGACCACACACTTTTTTACATAACTAAAAATGTGTGGAGTGCAGTGTTAAAAGTTATTCTCCTCAACATCAGTGTGCCCTCATAGAGGTTATACTCTTATATGGGTGTACAGGGCAACTGTTCTGGCACCAGCTAGCACAGTTGAAACAAAGCCAAATCACATCTAACAGTACTGTCTTTCCAAGATATCTGCCCCCTTGAACCAATAGAATGAGTCCTTGCAAAACGTGTGCCATCTATAGGCCAGATAAACATTTCCCAGATTTACATGCGGGAGCTCTCCACTACGGTTACCCACGGGACGACTACTGTATTCACTCATgacaaaaatcaaatcaaatttcaAAAACATGCCCTCTAAGTCACTTGACTTAAATTTCCAGAGAGGGCTACGGAACAATTCATGagaaaaatgaatacatttcatACTCCAATTTTATCTACTTACTCAATGATTCATCcaaatatataatgtgtgttttttacaTTGCAGTGTTTGCCATGACTTTAGTATGAGGCATTAGTACAAATGCGCCCAACAACGGGTGCCCAAGAGCCCTACACAAAACAGAGATTTCTTTCTCCTGGCTCACTGGCTTTCTGCTTAGCTGTTGCCACATGCGCCTGCTAACATCGTACTGTAAAAGGCAGATGCCATGTTAAGTCCAGGTCAAAGGTGAGAGGGGGTTTTTGCCAGGGGTGGAAAAGAACAGGAGGACAGATTGTGATAAAGGGCTTGACTGGAGCATATGTGTAGGATTCCTTGTACGCTTGTGTGAGAAGGAGTGTTTACTTCTTAGCACATACTGTTCAACCTACAGTATGTATTAGGGGATGCAATTGTGCTTGACTAGTGGTGGTGTGTTCGCATACTTGTCTTGTGTGTCTCCTCAGCCCTTTCCCACAGTTCTGTTCTCTCGCCGATTGTTCGGCTCCATCCTCGGTTGCTGCTCCGCCCTCTTCTCCATCTCTTCGGTGCTGGGCCTTGGTGCACTCCCGTGaaacactctcacactctctgGTAACTGAACAATGGGGTTTGAGGCTGAACAACTGGAGATCCTGACATGAGAACATGCAATGAGGTACACTGCCATAACCAAGAGCTTCAACATCCAGGGTCTTCCACCCTTCAGCTTAAAAGCGATGTTCAGCCCTGAGTAATTGAGAACTGTTGGGTCAGCTAGGGTGGAGCAAACATCCATCACACCATATGTATAGATATACATGAGTATGCAAACAACCAACTTGTTCATTGTTTACCATAGTAGCCAGAGTAGTTCCTCTCTGTTGTAGTGAATGAACAGCCATGTTAATAGTTAGTCAATTAATGAATAATAAGTATtgtcaaactaaaaaaaaaatactaagcAAAACAGCCAATATAGGGGTTCCTCAGGACCAACAAACAAGACCACTGAACCAGCTGACTCAGGGGTGTCTCAATGCAGTTCTCATCCCCAGGCATGTCCTCAAGGGTCTCCATTTTTTCCTTAACATATTGCATCCTAGACCACTCCTCGGCTGGGATTGTATCACTAAATTATGATTTGCACGTTTGTTTTCTTGGGAATGATTATTATACGTTTTTTGTGGTAGTTGGCTGCCTGGCATATGGTGCATCCTTTCTAAACACTGCTGACTTTTTCGAGACGTGGACACATGTCCAAATCAGGTGCAAATACACTGTGATTCAttcatttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtatgtgacaacgGTATTATATAGCATCATAAACAAGATTATGTACAACTGGGCTGCATTTCGTCTAGTGGTAAAACGCAGAGTATTTATGCTTGCTTAACTGTGTCATTAGAATAGTAGTAATGGCGGTTAGTTAACACTCATTGATTTAAATTTTACAGTGCAAAGAGTCTACAAGtctgatttttttatgaaacatgcagtatattttacatatttctACAGAACAGTTATAGTTTTACCACATTCTGTATCTAGTAAAAAGGATTAGATAAAAGCTGGTTAATAAGTGGGTtttgattttgtatttttccttAAAATTATACATGGGTTTCAAGAGCTAAGCTACACAAGAGTGCAAGTAAAAGCCGTTACTATACAGTGTAGTAGTAAGGCTGCCACACTTTATACCATAATCAAGGGCACAAAGAAATCCCCTGCAGAGAATTGTTTTTGTCAGGTTACCTGCCCAGTTTCACATCCCTCGACAGCCACAACACACAGCAAGAGCATCTGAACAGCAAGCTTGTTCTTCTCAGTCCTTGTTGTGCCTTGTCACTTTGGGTGCTTTAATCCAGCCATGGCAGCCAGGTCCGCAAACAACAATGCCAATGTCTTTCTTTACTTGTTTCATGTGCCACCACATTCACCAAGACGATGACAACACCAAACAATATTCTTCTTGTCGGTCTCCTCAAACCAGATCAAGCCAAGTTCTCAATACTGTCAGCTCACACCTTAGTCGACAACAACATTTAGTTTACCGTTTCATCCAAGTTGTCATCAATAGGACTGCACTGTTTCCTAGTTACAGTGTTACAACTAAACTTCACAGCGTGACAGAACCAAGTGGTGCGTACAGTGTGAAACCCAGTTATTGGCTCTATCAAAGACATAGGAGGAAAAAGTAAGGCAATACTGAACATCTTCTGTACTTGAACGTAGGGTTCCTCATCTTTATTCCATTTGAGCAAGCTGAAACACAACAGACCCAGTTGATTCAGCAAGTTACAAATTAGCAGTTTGGACTGAGCTCAAAAGCATTAGTTTTGGACTGTTTGATGGATAGTCTTAACAAATGCCAGCCACGATACCAAGCGATTTGGTCAATGATTGTTTTGTACTTTTGTCTATGCCTTTACATCTTATTCTGTCTTGCAATGATGAATGATTTGTAGTGCCAAGACGTAAACTTTGTGTCTTTTGTCTcgtgtgaagaaaaaaaaaattctctcgCCAAAATAATAACGCCTGCAGTTGGAATAAAACATGGAGGAAGTCAATGATGACAAAatgcgcaaaaaaaaaaaaatcacttatgTTGCATTTTCTTACAATGGAATGATGAAACAGGCCCGATCACTGATTCACTTTTAAATAACCTCATTTCCTGGTTTTCCAACCACCTCCCAGCATGCCTTTAAAAGTCATTGTGAGGTGACCCTCAACATTTAGCATGTAAGTGCTCTCAACTGCACAACAAACCCTCTGATTTCTGCATTAATGTGTAGCAGCAGGTCATTGTAGTGTTTAACTTGGTTTAAGTATGTACCTTAGTGTCATGACCATCTGTTTGACCACTGGAGTAGTATGTTCAGATGATAAAACGGTgcattttcttcttttacttttgatCCTTCTTTGATTTCTGTTAATAACCTGGTGCTGAATTTAAAAGGTGCTACCACTGTGGACTGCAGTCCACTTTTTAGCTTTCTGATAGCAGCCTTCCGGTTGACTGAGAGGGCCTGCGCCCCGCAAACTTGCAGTCTCAAAATGCTCTAGAGCTAGCACCTCAAATCCACACAGTTTACAGCAGAACTCAACTCTTAATGGTGCCATTTTGATTTTCCAAcctgcacaaaaaaacaacatttactctgtgtatatatactttAATATACTGGTTtcagcatacagtatgttttaattTTACTATGATTCAATCTGCACtaggatttttttctttcttttctctgagAGACTGAAACTGGCAGATGATAAAATGCATCTTTTTGGCAAACGCACAGGAGCACAAATGTACTATTGCTAATGGAATTtgggtaaaaaaaattatatagaaTGTGATTGCTGTGTTGTAAATTCCTGTCATCTATATGTCCTTAATCTGTGTGTAtctatttttgttgttattgtagAATTGGCTGTAatattttgtttgaaaatggATTTGATATTCCAATGAAGCGACTATGGTTGTCATATTAATTGCTGCTGATTTTTGAAATTGTTATCAAAGGTGTTGGGAAATATTGCTTTGTTTATATTCAATCAATTTCTAGATTGTGTTAGCTTGTTGGTGTATTTCACAAATCTATCAGGATACTCCCTAGACTATATGATTTATCCGGGGTATTCAAAAGTTGGCATAATGTCAGTAAGCAAATTCGCTACAATCTGTAGCATCTTTATGAAAGTGTACTCATACAGCTTATGTTGTAACTGAGAACATATAAGGAAAgatttctttgttgttgttgaatataaaaTGTAAGTAAATTGTTTCATGGAATCCCCgttctttaaaaaaagcaaaactgATGTCCTATTTTTGGGAACAATATGaatattattaataacataTGGTGCTACAGTTCTTTTTGTATGTTTTGGTTTTTAGATGAAAAGAGAAATATTATGCTGAAAATGTAATGTTAAGCCTTACTGTAGATTCATATATCAGACTGTTCATCCcagaagagaaaataaatatagtATTTGAAAGTGCAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250834 lncRNA downstream 134197 17687876 ~ 17691442 (-) True G185200
TU250736 lncRNA downstream 197779 17623124 ~ 17627860 (-) True tbpl1
TU250725 lncRNA downstream 229642 17593366 ~ 17595997 (-) True G185125
TU250724 lncRNA downstream 239147 17586251 ~ 17586492 (-) True G185124
TU250721 lncRNA downstream 247351 17565669 ~ 17578288 (-) True G185123
TU250888 lncRNA upstream 36288 17916141 ~ 17916528 (-) True G185236
TU250975 lncRNA upstream 177567 18057420 ~ 18058172 (-) True G185294
TU250976 lncRNA upstream 180536 18060389 ~ 18061348 (-) True G185295
TU251009 lncRNA upstream 257872 18137725 ~ 18140207 (-) True G185320
XR_005636852.1 lncRNA upstream 304107 18183960 ~ 18186587 (-) True LOC120546287
XM_039781500.1 mRNA downstream 1122 17814475 ~ 17824517 (-) True ccm2
XM_039781501.1 mRNA downstream 4435 17814475 ~ 17821204 (-) False ccm2
XM_039782789.1 mRNA downstream 35160 17783739 ~ 17790479 (-) True sh3bgrl2
XM_039782775.1 mRNA downstream 45729 17767159 ~ 17779910 (-) False LOC120547258
XM_039782774.1 mRNA downstream 46662 17767159 ~ 17778977 (-) True LOC120547258
XM_039782307.1 mRNA upstream 182867 18062720 ~ 18101094 (-) True si:dkey-71h2.2
XM_039782035.1 mRNA upstream 222409 18102262 ~ 18125572 (-) False si:ch211-278j3.3
XM_039782034.1 mRNA upstream 222409 18102262 ~ 18125570 (-) False si:ch211-278j3.3
XM_039782033.1 mRNA upstream 222409 18102262 ~ 18125570 (-) True si:ch211-278j3.3
XM_039782042.1 mRNA upstream 261870 18141723 ~ 18172492 (-) True snx17
TU250856 other downstream 58999 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other downstream 58999 17764922 ~ 17766640 (-) False zgc:153284
XR_005637056.1 other downstream 62831 17762733 ~ 17762808 (-) True LOC120547353
XR_005637061.1 other downstream 63157 17762398 ~ 17762482 (-) True LOC120547359
XR_005637059.1 other downstream 63601 17761956 ~ 17762038 (-) True LOC120547356
TU250885 other upstream 31417 17911270 ~ 17913036 (-) True G185233
XR_005637051.1 other upstream 188645 18068498 ~ 18068613 (-) True LOC120547347
TU251109 other upstream 609963 18489816 ~ 18492858 (-) False LOC120546829
TU251114 other upstream 613455 18493308 ~ 18506188 (-) False LOC120546829
XR_005636828.1 other upstream 898277 18778130 ~ 18789415 (-) False abcd4

Expression Profile