RNA id: XM_039782209.1


Basic Information

Item Value
RNA id XM_039782209.1
length 1223
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC120546939
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17656654 ~ 17657876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCCTGAAGGGGCATCAAGAGACAGCAGAATGAGGGCAGGTTTATCTTTGCTGGGTTTGCTGCCCTGCCTCTTGGTTTCATGTGTTCTCTCCCTGCGAGCAAGTGAAGCAGGGGAGACCAAACTCCACCATTTCCTGCCTGATAAAAAGCAACCTCTGGACCCTGATACCACCGCTGATGAGGCCCATGACCAAACCAACACCGGCCCTGACATTTGGACGGAGGTGAGGATGCTGAGAGACATGGTGGTGGAGCAGAAGGTGGAGCTGAGGAACATGGAAGCCAGGCTGAGGGAGACAGAGATACAGGCAGATGATCAGAAGTTGGATCTCCTCCTAACTAAAACCAgcctggaggagctgaagagagATCACACTACCACGAAGGAGAGACTGAGAGCCAGTGAGAAGCAAGTGGAAGAACTAAAGAAAGTAAACATGGAGCTGAGGGTTGATCTTGAAAACCAGGCAGCTCAACTCTTGTCCATAGAAGCCAGAGTGACAGTCGGTGACAGTGAGCTGCAGCTCCTAACACGCAGGATGGATGACTTGCAGGCTCAGAACACGGCTCAAGAAGTTGAGCTGGTCTCTCTAATGGACAGGATGAACACTACTGAGAGCAGAGTGGATAGTCTCATCAAAGAGAATGCAAAGGTGGCATTTTACGCTGCTTTGACAGACTCAGGAGGTGTAGGGCCTTACAGTACTCCAACAGTCCTAAAGTTCAGCAAGGTCTTCACCAATTATGGTGCCGCCTATAGTCCAACCACTGGCTTCTTCACTGCGCCGCAGAAAGGAGTGTACTATTTCAGATTTACAATATGTGGTCATACAGCAGAGGGCCACATGGGAGTGCAACTATTTCTTAACGGGAGATTAATGATGTCGAATTTGCAAAGCAGGTATAATGGCCATTTTGAGTACCTGTCAAATGCTGTTACTCTAGAGCTGAATGTCGGTGATGAGTTACATTTGGTCCTCCCACAGGAGCATGCAATCTTTGATAATAACACCAATCACAGCACATTTAGTGGATTTTTGCTTTTCAAAATGTGATGCCAATCTAATACAATTTGGAACAACCcagcaaaattaaataaatgaaaataaattaaatgattaCTGTGTTTTGTAAAGTCTACTCAGTCAATGTAATAGTATATAGTAGTAGGCTATAGTAAGAATATTTACCATGCTCTTCAATTATCAGCATGACTGTATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250736 lncRNA downstream 28794 17623124 ~ 17627860 (-) True tbpl1
TU250725 lncRNA downstream 60657 17593366 ~ 17595997 (-) True G185125
TU250724 lncRNA downstream 70162 17586251 ~ 17586492 (-) True G185124
TU250721 lncRNA downstream 78366 17565669 ~ 17578288 (-) True G185123
TU250691 lncRNA downstream 129289 17525518 ~ 17527365 (-) True G185094
TU250834 lncRNA upstream 30000 17687876 ~ 17691442 (-) True G185200
TU250888 lncRNA upstream 258265 17916141 ~ 17916528 (-) True G185236
TU250975 lncRNA upstream 399544 18057420 ~ 18058172 (-) True G185294
TU250976 lncRNA upstream 402513 18060389 ~ 18061348 (-) True G185295
TU251009 lncRNA upstream 479849 18137725 ~ 18140207 (-) True G185320
XM_039782086.1 mRNA downstream 25303 17624715 ~ 17631351 (-) False tbpl1
XM_039782084.1 mRNA downstream 25303 17624715 ~ 17631351 (-) False tbpl1
XM_039782085.1 mRNA downstream 25303 17624715 ~ 17631351 (-) False tbpl1
XM_039781166.1 mRNA downstream 181758 17465918 ~ 17474896 (-) False myb
XM_039781165.1 mRNA downstream 181760 17465918 ~ 17474894 (-) True myb
XM_039782815.1 mRNA upstream 39562 17697438 ~ 17701407 (-) True LOC120547287
XM_039782772.1 mRNA upstream 102994 17760870 ~ 17763808 (-) True rps12
XM_039782776.1 mRNA upstream 106991 17764867 ~ 17766910 (-) True zgc:153284
XM_039782775.1 mRNA upstream 109283 17767159 ~ 17779910 (-) False LOC120547258
XM_039782774.1 mRNA upstream 109283 17767159 ~ 17778977 (-) True LOC120547258
XR_005637006.1 other downstream 820671 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 1138782 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1865096 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 3077485 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 3158284 14472201 ~ 14498370 (-) True G184299
XR_005637059.1 other upstream 104080 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 104522 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 104857 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 106929 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 107046 17764922 ~ 17766640 (-) False zgc:153284

Expression Profile