RNA id: XM_039782772.1


Basic Information

Item Value
RNA id XM_039782772.1
length 547
RNA type mRNA
GC content 0.52
exon number 6
gene id rps12
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17760870 ~ 17763808 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTATGGCACAGATGGGTCCTGGTGCTATGAAAGCAATGTCGCAAGTTTATGACGTCCTCTTTTACCGCTACCCGAGAGTAGGATAGGAACTTTTAAGCCTACCATCCATCTTTAATCAACAATGGCCGAGGAAGGCGTCGCTGCTGGAGGTGTGATGGATGTCAACACTGCTCTCCCTGAAGTGCTTAAGACCGCTCTCATCCACGATGGCCTCGCCCGTGGTATCCGTGAGGCTGCTAAGGCCCTGGACAaGCGTCAAGCCCATCTCTGCGCCCTTGCAGGCAACTGTGATGAGCCCACCTACGTCAAGCTGGTGGAGGCCCTCTGTGCTGAGCATCAGATCAACCTGATAAAGGTTGATGACAACAAGAAGCTCGGCGAGTGGGTCGGTCTGTGCAAGATCGACCGTGAGGGCAAACCCCGCAAGGTTGTGGGCTGCAGCTGTGTCGTTGTCAAGGACTATGGCAAGGAGTCTCAGGCAAAGGATGTGATCGAGGAATACTTCAAAAGcaagaaataaaatgtcaataaaaagtgGAAATGGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02951 RP-S12e, RPS12; small subunit ribosomal protein S12e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250834 lncRNA downstream 69428 17687876 ~ 17691442 (-) True G185200
TU250736 lncRNA downstream 133010 17623124 ~ 17627860 (-) True tbpl1
TU250725 lncRNA downstream 164873 17593366 ~ 17595997 (-) True G185125
TU250724 lncRNA downstream 174378 17586251 ~ 17586492 (-) True G185124
TU250721 lncRNA downstream 182582 17565669 ~ 17578288 (-) True G185123
TU250888 lncRNA upstream 152333 17916141 ~ 17916528 (-) True G185236
TU250975 lncRNA upstream 293612 18057420 ~ 18058172 (-) True G185294
TU250976 lncRNA upstream 296581 18060389 ~ 18061348 (-) True G185295
TU251009 lncRNA upstream 373917 18137725 ~ 18140207 (-) True G185320
XR_005636852.1 lncRNA upstream 420152 18183960 ~ 18186587 (-) True LOC120546287
XM_039782815.1 mRNA downstream 59463 17697438 ~ 17701407 (-) True LOC120547287
XM_039782209.1 mRNA downstream 102994 17656654 ~ 17657876 (-) True LOC120546939
XM_039782086.1 mRNA downstream 129519 17624715 ~ 17631351 (-) False tbpl1
XM_039782084.1 mRNA downstream 129519 17624715 ~ 17631351 (-) False tbpl1
XM_039782085.1 mRNA downstream 129519 17624715 ~ 17631351 (-) False tbpl1
XM_039782776.1 mRNA upstream 1059 17764867 ~ 17766910 (-) True zgc:153284
XM_039782775.1 mRNA upstream 3351 17767159 ~ 17779910 (-) False LOC120547258
XM_039782774.1 mRNA upstream 3351 17767159 ~ 17778977 (-) True LOC120547258
XM_039782789.1 mRNA upstream 19931 17783739 ~ 17790479 (-) True sh3bgrl2
XM_039781500.1 mRNA upstream 50667 17814475 ~ 17824517 (-) True ccm2
XR_005637006.1 other downstream 924887 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 1242998 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1969312 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 3181701 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 3262500 14472201 ~ 14498370 (-) True G184299
TU250856 other upstream 997 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 1114 17764922 ~ 17766640 (-) False zgc:153284
TU250885 other upstream 147462 17911270 ~ 17913036 (-) True G185233
XR_005637051.1 other upstream 304690 18068498 ~ 18068613 (-) True LOC120547347
TU251109 other upstream 726008 18489816 ~ 18492858 (-) False LOC120546829

Expression Profile