RNA id: XM_039782312.1


Basic Information

Item Value
RNA id XM_039782312.1
length 790
RNA type mRNA
GC content 0.44
exon number 6
gene id acp1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19633500 ~ 19648156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACTAGTTGGCCACCACCTGCGGCGTCATACAGGACCCTTCAGAACAACATGGCGGCCACTGGTACGAAGTCGGTTTTGTTCGTTTGCTTGGGGAATATTTGCAGATCCCCCATCGCTGAAGCAGTCTTTAGGAAGATGGCAACAGATGCTGGTGTTGTTGATAAGTGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGAAACCCTCCAGACCACCGTGGTCAAGCCTGCATGAAGGGACATGGCGTGCCCATGAAGCACGTGGCCAGGCAGGTAACCAAGGATGATTTCATGAGCTTTGACTACATTCTCTGCATGGATGAGAACAATTTAAGTGAGTTGAACAGGAAAGCCAAACTTGTGAAAAACCACCATTCAAAGATTGAGCTTCTTGGTTCATATGACCCACAGAAGCAGCTCATCATCGAAGACCCGTATTATGGGTGTGACAAAgactttgaaaaggtgtacgaaCAGTGTGTACGTTGCTGCAAAGCATTCCTGGAGATGAACTCTTAACAACATCTGATGTTAAACAATCTTTGCTGAAATGTTTGGATTACCATGAAAAATGTACCAAAAATGCTTTGAGTGTTTCACACTAGCACTCCTCACTATAACCCTCTTGTTGATGTCACTAGAAGAAAGTCACTAGACCAGGAAACATTTGTTTCAGTGTGGTAAATGTTCTACAAACCACACATTGTGTACATTTAGAAAGATGCTGCGTGGACAAGTTTGTAGACTGTAAATCCAAGTGattaataaaatagataaatGAG

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003993 acid phosphatase activity molecular_function
GO:0004726 non-membrane spanning protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251496 lncRNA upstream 13462 19572600 ~ 19620783 (+) False zgc:193593
TU251494 lncRNA upstream 57346 19572600 ~ 19576899 (+) True zgc:193593
TU251505 lncRNA upstream 80010 19553274 ~ 19554235 (+) True G185696
TU251470 lncRNA upstream 206782 19354616 ~ 19427463 (+) False acbd3
TU251523 lncRNA downstream 4107 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 44006 19692136 ~ 19693056 (+) True G185716
TU251630 lncRNA downstream 60201 19708331 ~ 19708930 (+) True G185793
TU251631 lncRNA downstream 61084 19709214 ~ 19709512 (+) True G185794
TU251632 lncRNA downstream 63397 19711527 ~ 19711832 (+) True G185795
XM_039781955.1 mRNA upstream 36138 19584702 ~ 19598107 (+) False si:ch211-225h24.2
XM_039781954.1 mRNA upstream 36138 19584704 ~ 19598107 (+) True si:ch211-225h24.2
XM_039782811.1 mRNA upstream 59789 19572573 ~ 19574456 (+) False zgc:193593
XM_039781582.1 mRNA upstream 92413 19516138 ~ 19541832 (+) False nhsl1b
XM_039781342.1 mRNA downstream 51592 19699722 ~ 19703391 (+) True LOC120546417
XM_039781214.1 mRNA downstream 64534 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781219.1 mRNA downstream 97047 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA downstream 97047 19745177 ~ 19801977 (+) False fig4a
XM_039781136.1 mRNA downstream 186355 19834485 ~ 19837398 (+) True LOC120546286
XR_005636888.1 other upstream 94937 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 95037 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 95037 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 426149 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 701858 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251678 other downstream 208605 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2296613 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2337649 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3930248 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3930248 23578378 ~ 23588514 (+) False nfkbie

Expression Profile