RNA id: XM_039782030.1


Basic Information

Item Value
RNA id XM_039782030.1
length 1235
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC120546816
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31606054 ~ 31614522 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctatccatctatccatccatccatccatccatcattaaCTGCTCCGTGTTGTGTTTCAGTGCCATGACAGCCAGTCATCCTCTAGTTGTGACGATTTTCATGGCTGCCGAGAGCTTCACAGACATGAACAAgtggaTCAGTAAACTGTCCGAAGCAGCCGAGCCGTGTGAACTGATCAACGCCAAAGAGTGCTACAGCGAAGGCAGCGATCAGGACGCTGACGAGTGTGTGGCCACTTCCTGTTCTCTGAACTCTGAGCAGGAAATAGCTGATTCTGAAAATGGAGACGTTCCTCAGCCTCTCGGTGAGTCGTCCCCCTGCACCTCCACCTCGCCAGCTTCACCGACCAGtgaaaacagaagaagaagcacCTTGGAGGGGAGGACTTTAAGTAGAAACAGAAGAGGAAGAGCGTCATCAGAGGGCGGTGAACGCCTGTCCTGGCTGGAACCGGCCGGGCCTGACGGAGCGTCCCTCCCTCCGATCCACGTCGGAGGAGAAACGGAAGACGAGGACGTCCACGAGAAGCCCGCTGATGAGATGGAGAGCCTGTACAACGACCTGAAGGCAGCCAGCTTGTCTCCGATTGGACAGTCCAGTCGGAGGGACTTCAGAGAGTCGTTCGTCAGACGATGTCAGAACGACAAAGTCAACGACAAGCTTCACCTGCTCCGGATCCTCCAAAGCACACTGAAGGCCAAAGAGTCGGAGCTGCTGGCGTTGGAGCAGATCCTGACCGCCCCGGCCCTTGCGGCGCCCACATACAGGAAGTGGAGACTCTCCAACGCCGTGGTGCTGCAGGAGATCGCTCAACGCCACCAGGAGATCGCTCAACGCCACCAGGAGATCGCTCAACGCCACCAGGCAGCAGGAGGCGCAGCACAGCTGGGATAAACTCCGGTTCCTCGCTGAAACACTGCTGGCTGAACTGGGACCAAACTGCTAAACATGGGATCTCCATCCAGAcggcagtggtggaaagtaactaagtacattagTCCAGTACTGAAAGGGTAACTTTTCAACCTGGACACTATTCTCCCATGGGTTTGTGTCTAAGGGACTAAaaatttgaaattggtccaCCATTAAGCGAGAAACAAGCTGCACTATAACGTTAAAGGGCAGTTGCGCGCCGTCAGTTctgagtccactaaaagtgctgtttttttgccactgacaggctcagattattataatttatagatatattatatataagtgtctgtcaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255776 lncRNA upstream 9573 31597215 ~ 31597715 (+) True G188749
TU255775 lncRNA upstream 15829 31591055 ~ 31591459 (+) True G188748
TU255758 lncRNA upstream 134290 31472777 ~ 31472998 (+) True G188737
TU255757 lncRNA upstream 148587 31458421 ~ 31458701 (+) True G188736
TU255734 lncRNA upstream 251783 31351448 ~ 31355505 (+) True G188719
TU255793 lncRNA downstream 60183 31674705 ~ 31752206 (+) True G188757
TU255799 lncRNA downstream 88509 31703031 ~ 31703647 (+) True G188761
TU255801 lncRNA downstream 94357 31708879 ~ 31710971 (+) True G188763
TU255807 lncRNA downstream 105570 31720092 ~ 31721287 (+) True G188768
TU255825 lncRNA downstream 225284 31839806 ~ 31911299 (+) True G188785
XM_039781365.1 mRNA upstream 20339 31582418 ~ 31586949 (+) True LOC120546439
XM_039782029.1 mRNA upstream 31537 31507627 ~ 31575751 (+) True cnksr3
XM_039781932.1 mRNA upstream 102430 31496301 ~ 31504858 (+) True rps7
XM_039781208.1 mRNA upstream 297892 31169067 ~ 31309396 (+) True hivep2a
XM_039782544.1 mRNA downstream 5886 31620408 ~ 31704363 (+) True LOC120547115
XM_039782543.1 mRNA downstream 5886 31620408 ~ 31704024 (+) False LOC120547115
XM_039781689.1 mRNA downstream 121048 31735570 ~ 31756918 (+) True cebpz
XM_039780976.1 mRNA downstream 162441 31776963 ~ 31782066 (+) True LOC120546196
XM_039782524.1 mRNA downstream 252372 31866894 ~ 31869296 (+) True nkx2.2b
XR_005637055.1 other upstream 103060 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 106234 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 107960 31499109 ~ 31499328 (+) True LOC120547350
XR_005637052.1 other upstream 109114 31497955 ~ 31498174 (+) True LOC120547349
TU255105 other upstream 751924 30853975 ~ 30855364 (+) False G188352
TU255816 other downstream 162507 31777029 ~ 31781038 (+) False LOC120546196
TU256147 other downstream 961956 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1713581 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1839474 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 2027098 33641620 ~ 33685556 (+) True G189309

Expression Profile