RNA id: TU255807


Basic Information

Item Value
RNA id TU255807
length 775
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G188768
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31720092 ~ 31721287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccgtttcaagtgaacgcaccgtctgtgtcgTTTTTCTGACAACGGCAGACTGTGACCCcgttacgtcccggtgttggaatcctctccagagaaatccagtcacactttactccgtttaacgttagctgtcggCATTTaatcgtgtttaatccagctgctagctaaagctaggctaacgttacctgctgtcgagtaacgctgtgtgtgtgtgtgtgtgtgtgtgtgtctctttctctgtgtgtgtgtctccgtgtgtgtgtgtgtctctctctctgtgtgtgtgtgtgtgtgtgtgtctgtgtctccgtgtgtgtgtgtgtgtctgtgtctccgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctctgtgtgtgtgtgtgtgtgtgtctgtgtctccgtgtgtgtgtgtgtgtctgtctctctgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtctgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctctgtgtgtgtgtgtgtctctctctttctctgtgtgtgtgtgtgtgtgtgtctgtgtctccgtgtgtgtgtgtgtgtctgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctctgtgtgtgtgtgtgtgtctctctctttctctgtgtgtgtgtgtgtgtgtctgtgtctccgtgtgtgtgtgtgtgtgtgtctctctttctgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255801 lncRNA upstream 9121 31708879 ~ 31710971 (+) True G188763
TU255799 lncRNA upstream 16445 31703031 ~ 31703647 (+) True G188761
TU255776 lncRNA upstream 122377 31597215 ~ 31597715 (+) True G188749
TU255775 lncRNA upstream 128633 31591055 ~ 31591459 (+) True G188748
TU255758 lncRNA upstream 247094 31472777 ~ 31472998 (+) True G188737
TU255825 lncRNA downstream 118519 31839806 ~ 31911299 (+) True G188785
TU255856 lncRNA downstream 197712 31918999 ~ 31927133 (+) True G188809
TU255863 lncRNA downstream 225911 31947198 ~ 31952652 (+) True G188816
TU255866 lncRNA downstream 247336 31968623 ~ 31968941 (+) True G188818
TU255867 lncRNA downstream 264025 31985312 ~ 31986086 (+) True G188819
XM_039782544.1 mRNA upstream 15729 31620408 ~ 31704363 (+) True LOC120547115
XM_039782543.1 mRNA upstream 16068 31620408 ~ 31704024 (+) False LOC120547115
XM_039782030.1 mRNA upstream 105570 31607288 ~ 31614522 (+) True LOC120546816
XM_039781365.1 mRNA upstream 133143 31582418 ~ 31586949 (+) True LOC120546439
XM_039782029.1 mRNA upstream 144341 31507627 ~ 31575751 (+) True cnksr3
XM_039781689.1 mRNA downstream 14283 31735570 ~ 31756918 (+) True cebpz
XM_039780976.1 mRNA downstream 55676 31776963 ~ 31782066 (+) True LOC120546196
XM_039782524.1 mRNA downstream 145607 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA downstream 145607 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782187.1 mRNA downstream 160178 31881465 ~ 31884802 (+) True nkx2.4b
TU255785 other upstream 109991 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 215864 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 219038 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 220764 31499109 ~ 31499328 (+) True LOC120547350
XR_005637052.1 other upstream 221918 31497955 ~ 31498174 (+) True LOC120547349
TU255816 other downstream 55742 31777029 ~ 31781038 (+) False LOC120546196
TU256147 other downstream 855191 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1606816 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1732709 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1920333 33641620 ~ 33685556 (+) True G189309

Expression Profile