RNA id: TU256405


Basic Information

Item Value
RNA id TU256405
length 336
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G189219
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33286978 ~ 33287313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattacagcaaatacgtcggcagtattgacggcaaaataggctccagaatatttccatctggattgacaggtgcaatattttaAAATTGGGGGCCAAGCAGCAAAGCTCCAAGGCCCCATAGTGATTCTACTTATTGCACATCTTTCCTCTGCCATGGGAGTCTATGGCAGCCCATAGAACCGGACAGTAGAAAGTTGTGAAATTTGGCACATTGATTCGGGACAATCCCTCaattcattttcagttttagGTCTGcgctaacctgactccaccagatgcatcgcttcgcatttgcttggcatatccatctgggaactttccgttggagaacggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256345 lncRNA upstream 32865 33253663 ~ 33254113 (+) True G189171
TU256337 lncRNA upstream 47833 33238698 ~ 33239145 (+) True G189167
TU256311 lncRNA upstream 102141 33178754 ~ 33184837 (+) True G189156
TU256307 lncRNA upstream 133512 33153225 ~ 33153466 (+) True G189152
TU256295 lncRNA upstream 140385 33134521 ~ 33146593 (+) True G189143
TU256404 lncRNA downstream 548 33287861 ~ 33288937 (+) True G189218
TU256415 lncRNA downstream 6507 33293820 ~ 33352523 (+) True G189228
TU256419 lncRNA downstream 95517 33382830 ~ 33386952 (+) True pex7
TU256454 lncRNA downstream 112730 33400043 ~ 33400577 (+) False LOC120546192
TU256461 lncRNA downstream 148472 33435785 ~ 33436131 (+) True G189262
XM_039780901.1 mRNA upstream 38 33279911 ~ 33286940 (+) True LOC120546153
XM_039781465.1 mRNA upstream 48651 33231034 ~ 33238327 (+) True LOC120546516
XM_039781460.1 mRNA upstream 58139 33201405 ~ 33228839 (+) True bub1
XM_039782540.1 mRNA downstream 40779 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA downstream 40779 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA downstream 40779 33328092 ~ 33386989 (+) False pex7
XM_039780971.1 mRNA downstream 112488 33399801 ~ 33416086 (+) True LOC120546192
XM_039780949.1 mRNA downstream 342487 33629800 ~ 33666253 (+) True LOC120546181
TU256147 other upstream 664714 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1505940 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1676877 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1782750 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1785924 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 40790 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 166683 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 354307 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 476152 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 478188 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile