RNA id: XM_039781219.1


Basic Information

Item Value
RNA id XM_039781219.1
length 4277
RNA type mRNA
GC content 0.45
exon number 24
gene id fig4a
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19745177 ~ 19830843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGATCTTTCATGACAGTCACCTGACTAAAACAAAGTCATGTTGCAATTAGCTAGTGCTAGCCGTAAATACTTGTGCAAGCTACATACacaattaatgaattaaaaacgTTCAAATAGCTAAGTTATTTAGACTACCAGAGGAGATGCATTATTGCGTATTATTCTATGTGGGGATGATTTGTGGCTaacccagctagctagcaaatgCTCTTCAGTTGTCTCTTCTGGATTGTTTGGAGAATACAGGGATAAAAATGCCTCAGTCAGCGGCTATCATCAGTGGGATCCAGAGGATGGTTTTGTATGAAACCAGAGCCAGGTATTTTTTGGTGGGGACCAATCAGTCAGAGACGAAACACAGAGTCTTGAAGATTGACCGCACCGAACCCAAGGACCTGGTCATAATTGACGATAAGCATGTGTACAGCCAGCAAGAGGTTCGGGAGTTGTTGGGTCGCCTGGACCTGGGCAACCGGACCAAGATTGGCCAAAAGGGTTCCTCGGGCCTGTCCAGGGCTGTTTCCGCCTTTGGCATTGTGGGGTTTGTACGTTTCCTCGAGGGGTACTACATTGTGTTGATCACCAAGCGCAGAAAGATGGCTGACATCGGTGGCCACTCCATCTACAAAATTGAAGACACCAGCATGATTTACATCCCCAATGACTCGGTCAGGGTTACACACCCTGATGAAGCAAGATATGTGCGGATCTTTCAGAACGTGGACCTATCCAGCAACTTCTACTTCAGCTACAGCTATGACCTGAGCCATTCGCTGCAGTACAACCTGACTTTGCTGCAGAGACCTTATGAACTGTGGTCTTCACCAACTTCCCCTGCTGAGGAAGAAGTTAACAAACAGAGCAAGCAGGACAGCTTCGACATCTTTGAAGATGAGGGTCTGCCTACGCAGGTGGTTTACGGCCTCCAGAGCGAGCCGTACTACAAGTACGTGTGGAACGGGAAGCTGCTGGAACGAGTCAAGGACATAGTGCATCATGACTGGCTCATGTATATAATCCACGGCTTTTGTGGCCAGTCCAAGCTGCTGATCTACGGCCGACCGGTCCACATCACCCTTTTTGCCAGGCGCTCCAGCAAATTTGCCGGGACCCGCTTCCTCAAAAGAGGAGCCAACTGCGAGGGGGATGTGGCTAATGAGGTTGAGACAGAGCAGATCGTCCATGATGCCTCAGTTATGTCTTTCGCAGCAGGAAGTTACTCCTCATACGTCCAGGTGCGAGGTTCAGTCCCGCTCTACTGGTCCCAGGACATTTCCACCATGATGCCAAAACCCCCAATACGATTGGACCAAGCTGACCCATACGCCCACGTAGCTGCCCTCCATTTTGACCAGATGCTGCAGCGGTTTGGCTCTCCTATCATCATCCTCAACCTGGtcaagAAACGGGAAAAGAGGAAACATGAGAAGATTCTGAGTGAAGAGCTTTACCCAGCTGTGATCAACCTAAATCAGTTCCTCCCTCCAGACAACTGCATCGACTACATCGCCTGGGACATGGCCCGCTACACAAAGAGtAAGTTGTGCAACGTACTGGACCGTCTAAGCATGATAGCAGAGAACGTGGTTAAGCGAACCGGTTTCTTCATTAATCGTTCCGACTTCTACTGTCACACCATCAGACCAGATGACAGGTGGGGAGATTTAGGTGGACACATCACAGCCAGTGGACGAGTGCAGACTGGTGTATTGAGGACCAACTGTGTGGACTGTCTGGATCGGACCAACACAGCCCAGTTCATGGTGGGGAAGTGTGCGCTGGCCTATCAGCTCTATGCACTGGGAATGATTGACAAGCCCAAACTTCAGTTTGATACAGACTGTGTGAGGTTGTTTGAGGAGCTGTACGAGGACCATGGAGACACTTTGTCGCTGCAGTACGGCGGCTCCCAGCTGGTCCACAGGGTCAAGACCTACCGCAAGATCGCTCCCTGGACACAACACTCCAAAGACATCATGCAGACGCTGTCGCGCTACTACAGCAATGCTTTCTCAGATGCTGACAGACAGGATGCCATCAACCTGTTTCTCCAAGTCTACCAGCCATCGGAGTCCAAGCCACACCTGTGGGAGCTGCCCACTGACTTCTACCTGCATCAGAAGAACagcatgaccctcccccaagACAGACGCAGCTACACACTGTGGTGGTCACCAGGAATCTTATCTTACCTTCCTCTGGCCTATGATGAAGTCCCGTGTGAGGACAGCATGAAAAAGGTCAAAGTGAAGAGAGTGAACCGCTTTGAGGAGAGTATTGACATCTATACAGAATTCTTCAAACCTTATGAACTTACCGCCTTTGATGACACATTCTGCATCGCCATGACCAACTCTGCAagGGAATTCATGCCCAAGACCATTGGAGTGGATCCAAGCCCATTCACAGTTCGCAAGCCAGAGGAAACAGGAAAATCAGTGCTAGGCAACAAGAGCAGTAAGGAGGAGACCCTGCTACAGAGGAAGACTGCAGCCAGCGCCCCTCCTCCCCCGAGTGAGGAGGCCATTAGCAGCACATCGGAGGACGACTCCGAGGAGGACCGCGATGACGACGGATCCGTCTCCCAGCGCTCTACCCCGATCAAACTGCTAACAGAGTCTGGCGAAAGCAATCGCATACAGGAGgagatccagcagcagtcagttAAGGAGCCCTATGGACTCAATCTGTCTGAGTTTCCTGCTGAGAAAGACCTGCACATTTATGAAAGGTTTGTACATCTGGGCGAGAGCCAGCACAGGGTGGAAAGAACCGAACACATAAACCTGGCAAACATCATCTGCTTAGAGCCCGTGTCCTGCTTCCCAGAGGACAGCATCTATGGCGTTTCCCCCCCGCAGGTCGACAGAGAAAGCCGCGAGGAGTTTGAGAGCCATGTGGTGACGGGTCAGGGTCAGGTGAGGGTGCTGTGCAGGGACGACATGTTGATGTACAGGGAGTACGTCAAGAACAGATACATGTGAGACACAGACATCAAGAACTGGACCTCTGTTACCAATGTGCAAATCCAGATTATAAGATCAAATGCTGGGAGTATACTGTCCATAATGTTGCATGTACAACCCATGTGTCCTGTATTTGGACTCAACTATGCaggttgatttatttttattttttaactaagtcgtgtgtgttttacagtaatAGCTTCAAATGTTATTCAGTTAtgtcagttttgtttttattcattcagACTTGCCTCAACAGGCTACCTATATGgtgctttttatttgttctgttttttttccatttaaatTTAGATTGAAActcttttaattaaatttatttaactaaatgtttgttttgaacGTGTAAATTGATATAAATTTTgactcttaaaggtcccatattatgctaattttcaggttcatacgtatgccggggaatgactgtaacagcacAGTAGCGGCACTTTCCACCTACATATAGTATattatagttgtgacatcacaatcgtacggaagtcctgacggctcgtttataggcacagtttctgaatatgggctgtgtgcatttctctatggattgagcattttgatactttcacagtatttatatagcacctcgacctgctttataatttttacaatatgggatcTTTAAGTATTTTTGAATCTTAAAAGTTATAAACAATatcattatataatataattaatatgatgGCAAGCCCAGAGATTATGATAACTATGACTTATGATGTTCTTTAAATTCCACTTCAGATGTGCTTTGCGTTTTgatctttgtttttaatttattctGTTTAACCATTGTGCCATGACGGGGATATACATTGTTTTTCCTAAATTGCTCTCACAAAAACTATTTGAAACAATTGGCTTGCATAACTTAAGtcatgtactgtaaatgtatatCCAGGTTGTTTTCCTTTACACTCACATCACTGATACTTTGATATTGTGGGTTTTATCAAACCTCATTCTTAGTTTACAAAGCTGCACACCGATTTTGTTTTGTctaaatgcatttatttaatGTCATCTTATTATGACCGGTAGTTCTAAATTAAACACGTATTTACAGTATAAACATGATGTGACATTTGATTGATTCTACACTGTTCTTTTCCCTCTTTGCGCCTCTTCATATATTTCTGTGCTCTGTTGTTCTTCAGAAAAAATTATTAATACTTTCATGCAGCTTCTGTAACGGTTCTTCATCCCTCCTACTCTCTACTATTGTCtgtcacatttcttttttatgtattttacttAAAAGAGTCTCCCACCTCTTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG:

id description
K22913 FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251641 lncRNA upstream 5887 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 6913 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 9121 19735840 ~ 19736056 (+) True G185800
TU251636 lncRNA upstream 9453 19735518 ~ 19735724 (+) True G185799
TU251632 lncRNA upstream 33345 19711527 ~ 19711832 (+) True G185795
TU251673 lncRNA downstream 19331 19850174 ~ 19851711 (+) True G185827
TU251724 lncRNA downstream 114250 19945093 ~ 19980090 (+) True G185869
XR_005636880.1 lncRNA downstream 119768 19950611 ~ 19973343 (+) True LOC120546509
XR_005636841.1 lncRNA downstream 430942 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 430942 20261785 ~ 20288756 (+) False LOC120546242
XM_039781214.1 mRNA upstream 13953 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781342.1 mRNA upstream 41786 19699722 ~ 19703391 (+) True LOC120546417
XM_039782314.1 mRNA upstream 97047 19634244 ~ 19648130 (+) False acp1
XM_039781136.1 mRNA downstream 3642 19834485 ~ 19837398 (+) True LOC120546286
XM_039782594.1 mRNA downstream 21800 19852643 ~ 19860217 (+) True kif25
XM_039781451.1 mRNA downstream 88630 19919473 ~ 19944031 (+) True cdc40
XM_039781448.1 mRNA downstream 147021 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA downstream 147021 19977864 ~ 19992886 (+) True slc22a16
TU251521 other upstream 97021 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 205869 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 205969 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 205969 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 537081 19204154 ~ 19208096 (+) False LOC120546624
TU251678 other downstream 25892 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2113900 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2154936 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3747535 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3747535 23578378 ~ 23588514 (+) False nfkbie

Expression Profile