RNA id: XM_039781441.1


Basic Information

Item Value
RNA id XM_039781441.1
length 3392
RNA type mRNA
GC content 0.43
exon number 10
gene id rhag
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22945509 ~ 22959259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTCCCTTTACACAGCACAACTCCTAAAAAAGAgtgtcagtgagtgtgtgtcagagaTAACCAGAGTTGGTCTCAGGATGCCTGCGTACGCCACCAATATGAGGATGAAGTTTCCCATCGTGGCCTTGGCTTTGGAGATTATCACCATCATcctgtttggtgtgtttgtggTCTATGATGATGGAAAAAGTCACGGGCACGAGCCACACTCCAATGAGACTCACCATGAAGTGAAGCCCATGGATCTCTACCCCATGTTTCAGGATGTCCACGTCATGATCTTCATCGGCTTCGGGTTCCTGATGACCTTCCTGAAGCGATACGGGTTCAGCAGCGTGGGCGTCAACTTACTGCTGGCTGCCTTCGGCCTGCAGTGGGGCCTTCTCACGCAGGGCATCTGGCACCTGGAAGATGGCAAGATCAAAGTCAGCATATTCAAGATAATCAATGCAGACTTCAGCACAGCTACAGTCCTGATCTCCTTCGGAGCCGTTCTGGGTAAAACCAGCCCTGTGCAACTCCTCATCATGACCATCCTGGAGATCACCATCTTCTCCATCAATGAACATCTGGTGGCCACAGTCCTCGAAGCGAATGATGTTGGAGCATCCATGATCATCCATGCTTATGGAGCCTACTTTGGCCTGGCAGTGGCTCGAGTACTTTACCGACCAGGTTTAAGAAACGGACATGAGAACGACGGATCTGTTTATCACTCTGATCTGTTTGCTATGATTGGAACCGTCTTCCTGTGGATGTTCTGGCCCAGTTTTAACTCGGCCATCGCTGATCCGGGCTTCACTCAGCTCACAGCAGTGATCAACACCTACCTCTCCCTGGCTGCCTGTGTGCTCTCTGCCTACGCCATCTCCAGCCTTGTGGAGCACAAAGGAAAACTGGACATGGTACATATTCAGAATGCCACCTTGGCTGGTGGCGTCGCTGTGGGAACATGTGCTGACATGAACATCGGGCCATTTGGGGCAATGCTGATTGGATTAGTGGCTGGCATCATCTCTACCCTGGGCTTCAAGTACCTaactCCCATCCTGGCATCCAACCTGGGCATCCAGGATACCTGCGGAGTCCACAATCTGCACGGCATGCCTGGCATCCTGGGCGGGTTGGCTGGTATTGTGGCTGTGGCTTTGGGGAAAAAAGAGGGAGGTAATGCTGCCATGCAAGCTGCTGCCTTGGCTTCATCCCTGGGTTTCGCTTTGGTTGGAGGTGCTATTACAGGTTTAATAATGAAGTTGCCGTTCTGGGGACAGCCTCCAGACCAGAACTGCTTTGATGACTCTATTTACTGGGAGGttcctgaggaggaggaggagaatgagGAGAGCTTGGCTCACGCCGATCACTCAAAGAACAAAGCAGAGGTTTAAATATCTGCCAGAAATGAAGAAGTAAATGATTATTAATCAGCTACACTATGTCCGCGGATGTGTAATGTGATTTTAAAAAACTAGACGATTTGCTCTACTCACCAACACAAGTCAATTTTTGAAACTTGTTTGTGAGCAAAGATCTACAGCATTGTATTTTTCCATCATAGTACAATTTAAATTTGTAATCAGGATGGGCAGtgaatgttttacacaacagaGTCTTCAAAATACACATAATAAAAATGGTCAACATAAATATTCAGTTAATCCTTTTACACTCACACATTCAGGGATTTCTTTTGCATTGAAAATTGTGATCAATAACCTTGAAAACCCAGTGGGTCAAACCATAAATTCACTGCTGATACACAACTACTTACAtaagcttttttattttatttttatattatgaaaaacattaaagcatgttttTAGTATAGTGTGTATTTTTCTTCATATAATCTTTTATATTTCCATACACCTGGCATATGTATTTCTGCTGAGGCTTAGGTCAAAGAGAAGAGGAGTTAGGctatgtccacacacacactcaggcggTCCAGCAAAAACGCAAGTCtccccattcattttgactggGGGTAGTGCGTTGAAGCTGTGGCGGTGGGGGCCGCAGGGGGGTGCCGAAAAAAACTGCAACGGCCTGCAGCGTGGTgatcagacttgtcagtgtGTTTTGAGGCAGTGTGAGAGTCTTTTTAAATGATAGGGTggcctagacctactctatctgtaaagtgtcttgagataactcttgttatgatttgatactataaataaaattgaatggaATTAAGAGTCCCTTAGAGTAAACATCCCTGtatctatcgctgccacaacaaagttaaaaaaaaagttttctgcACCAATAAAGCACAATGctccatctcttttctttctctctttctatatgaaataaagctgccttcaagttcTATgaacgatctgacggaaaatTGTAAAATATAAAGTCCACTTGTGCTGCTTTGGGGGCTTAAAGAAcgcaacaggacgtcacacggATGGGCCTTTTTAGTGATATTTCCACAGCCGCAAAACACTGCGGATCGCTGGCTTTGGTCTAAACGTGCCCTTAAACCTGCTTTGatctgctgcttcacatcaCCTCACTGGAGCCCAGTCCTTCTGCAAGGAGTCAGAGTCATACTGTGTGAATCCAGCAGTGAGGCTCTGACATGGGCAGGGATAGTCGCATGATATGTTGTAACTAATAAACCTTATGGTTGCTTATTTCTCACTGCTTACAATAATGTTCTATCTATCTGAGGGCAGCTGTACAATTTCTTTAATGCAATGAGTGCATTTAGCGTTAGACTGGCTGTCAATGGGCAAGCTGAAGTTCATTTTTGTGTCCGCTTTCTATTTACATCCAGGGTATTCTGACATGTACATACAGTTTAGCTTTTAGATATATTGACATGGTCAGTTTTATCAAAGTCCtgcaatgttaaaaaagtgcaACTGGTACTGAATATTTTTTAGATGCCTTTAAAATAATTCAACAGGAACTTACATACTGAGACATAAGAATTGCTTACCATTTTCTTTATACCATTATATGCATCAGTTGGAATCAGTTTTTCTACCAGTTTTCTCTATAGGTGACTTCCTGTTGGATTATTTTTCATTCTGAGTTGTGAACAGTCACACCTGCAACTGTGTATATCACAGGATTAGAGAGCAGCCATTTCTTGTTTCGCAAAATCTTTTTAAGCTGAATGGTGTCTGAGTGCCTGAGTGGacagtttgttttgtgtttaacattaaaacataggACTGCAGGGCTAGATGGAACTGACTATACAGTAGTGTTAATCAATTTTGGTTTGTCAAATGGTTTATGATGCCCAGAACACTGAAGCACATCaagattttgtatttttatactaCGTGTCCTTAGATGTGCTCGTATTTGTATAATATACTAATACTGTcataataaatgtgtttttgtacaaTA

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252843 lncRNA upstream 97835 22846872 ~ 22847674 (+) True G186641
TU252810 lncRNA upstream 136048 22809220 ~ 22809461 (+) False kcns3b
TU252803 lncRNA upstream 145451 22799735 ~ 22800058 (+) True G186622
TU252735 lncRNA upstream 225616 22716970 ~ 22719893 (+) True G186578
TU252644 lncRNA upstream 407793 22535659 ~ 22537716 (+) True G186506
TU252914 lncRNA downstream 2792 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252933 lncRNA downstream 57698 23016957 ~ 23018800 (+) True G186697
TU252957 lncRNA downstream 133389 23092648 ~ 23095505 (+) False dtl
TU252958 lncRNA downstream 181248 23140507 ~ 23142640 (+) False ppp2r5a
TU252962 lncRNA downstream 184171 23143430 ~ 23143648 (+) True G186725
XM_039782422.1 mRNA upstream 43020 22892172 ~ 22902489 (+) True nrbp1
XM_039782421.1 mRNA upstream 43020 22892863 ~ 22902489 (+) False nrbp1
XM_039781478.1 mRNA upstream 70295 22860808 ~ 22875214 (+) True znf106b
XM_039781479.1 mRNA upstream 70295 22860808 ~ 22875214 (+) False znf106b
XM_039781345.1 mRNA upstream 88934 22848098 ~ 22856575 (+) True ttbk2b
XM_039781445.1 mRNA downstream 2774 22962033 ~ 22965996 (+) False si:ch211-22i13.2
XM_039780975.1 mRNA downstream 128561 23087820 ~ 23095221 (+) True dtl
XM_039781867.1 mRNA downstream 136653 23095912 ~ 23140786 (+) True ppp2r5a
XM_039781868.1 mRNA downstream 136653 23095912 ~ 23140786 (+) False ppp2r5a
XM_039781936.1 mRNA downstream 185649 23144908 ~ 23151382 (+) True opn8c
TU252499 other upstream 879920 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 998509 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3085304 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3297353 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3406301 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 619119 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 619119 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1120344 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1547654 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2044760 25004019 ~ 25009407 (+) False lama2

Expression Profile