RNA id: TU262377


Basic Information

Item Value
RNA id TU262377
length 2613
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G193213
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 11987274 ~ 11991708 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTATTCTTAAGgtaaacattttattcaaaaataaattacCGGAGATATCTTTAAAAGGCAGACAGACATTGTCTCAAACCCACTCGTCACAATCAAATGATTTTCCTATCAGAATCCAAATATTCACACCACGTTTCTATTAACGTCCGTCCTCATGAAAAGCAGATAAACTAGCGTAAACCCTAAAGCAGAAACTTATTCTTAAACAAACCAGACTGTTAAgttgatcaaaaaaaaaaaaacagccattgTCAACTGATTCActataaaatgtatacaaagtttatttaaatatttaatccaACATACATGCCCGATTTGTAATATGTGAacacagaaagagggaaaaaaaaaaagagagagagagagagagagagagagagagagagagagagagagagagagagactgtattGTATGAGACTGGCGATTGAGGTGAGAGATGTGGatggaatcaataaaaaaaaataaagagctCAGACAGAAGAGCAGCTGTGAGATAtataaaaggggggggggggttcagtCGATTAAATAATGGTCAACAGAGTGACTTCGATGTATCCAACTctagagaagggggggggggggaaaaaaggcagTAGATACAATCATTTCTGGTCAGTTAAAGAAACCGTTTTGGGAGATTTGTTAATTCAGTTTTGCTGAGAAGATTTATActgcatacatatacatatacatatatatatatatatatatattttgaggaCCTAAAAATGTGAGGTGAAAATAGTGTGGCATTCATGAAAGGCAGTGGGAGAGAAAATGGTTCAAAATGACAGACAGCCCTCCCCGGCGACCTGACTACAGAGGCCTGGACTCTAAAAAGGTTCTTAGCTAGCTTAATGCTACAACGCAGTAGCTCTTAACAGCATGCAGAGGGCCAAACACTGGCAGGTCCGCTACGAGACGCCAAAGGCCTGATAAAACACGTCAGTcctaaaattaaaaacatgtcaaaaaaaaaaaaatcagctgagaGGCTCGAGGCTTCCTATAGTTCTCTTCAGGATTACAaatcacaaaatattaaaaagggaaagacaaaaagacagatGTGTAGAAGCAACCTGAGCCCAGAGTTTGATTATATGCCACCTGGCTAACGCGCCTTCCAAACTTAAAGTGTGAGaaactaaatgaatgggagacAGCCAGGTGGACTAGTGGTGTCAGAAGAAGGAAAAATACAGTTTGGATTCATTTCCAGTTCAGGTTTGTAGAAGACGACGGATCAATTCACCAGGACAGACTGGAACCGTGacggttaaaaaataaaaataaaataaagcctCTCCAGCTTGTCTGTGACGGGGTTTTCGATTTACTCCCACTTCAGTAGAATCAATACAATCGTATTCCTGATTTCACTGAAATAACAAAAGACACGAGCACGACAAATCACCTCATTATTAGTCGATTATCACTTGTGCTTGTAGGAAACGTTAACAAACAGGCTGAAGAGAAAGTAAACTGAGCTCTGGCCTGTAAGACAAAACGATTAATGCACAGAAAAGTGTTTTCAGTTTGCATCCATTGTTGACAACAGTTGCCTACGGCGGTGTCAGTTTTCCCTGAATTACAGCTCAATCCTGAAGCGAGTGCAGTCTGCTACCAgcaagtgtgtgagtgtgagtgtgtgtgagtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcctacAACACAAGACACATCTATCACAGCATGGCACACTGGAGAAGATGACAGTCCTTTAGGTCCCGTTTTGGCAAGAGGCGTCGCCACCGGCTCGTCTGCTGGGCCCTCTCATGAAGCTGCAGTTTCTGCTCTGAGGCACTAGGGGGCGACGAAGAGCAGGGCAGCCGGCAAGCCTACAGGTCCACAAAAGCAAATATTGGGGCAGCGATGGTGTGATGATGGACGTTTGGAGGGGGATAAAAGAGGGTCAGCTTTGGTGTTGAACTAGTTTCACTGTTCTAGGATTGAACACATTGAGCGAGTGGGCAGGAGGGTGATGAAGATGACGGGGCGTCAGTGAGTCTTTAACTTGGTGTGCTGTGAGCTCTGCTCTGTCAAGCTGGCTTTGAGGGAGTTAACCACCGTCTGTCGGACGTTGTCTTCCATATAATGTTCACTTAGTGGCTTCAAAACCTGGTTCCCAGAGCGTCTCGGCCACCAGATCTATCATCGTTCCCAACTCCCGAAACTCTCCGGAATACTTCACATACGCCCAGGCGCAGAGCGAAAGCAGCGCCACGCCCATGACCAGGTTAGACAGCACCGCTAAGGTGCTCAGCCCGATGAAGCCCGTCACGCCGGACACCACGTAGGTGGCAAACATGACTGCGAAAAGCGTGGCAGGTGTGCGTGCTGTGTAGAAGATGTTTTTGCCGTCGTTGTGCTTGGAGAAGTTGGTGTAGGTCTCGTCCAGCTCGGACTCCAGCTGGCTCTGGTAGCGCTGGCAGAACTCCTCGCCGCCCATTTTCTTCACGGAGCGGAAGTAATGCACCGAGTGCTCGCGAAACTCCTCGTGGAAGCGCTCCAGGTCGGCCGGGGCAATGTATGGCTTGTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262313 lncRNA upstream 96071 11865425 ~ 11891203 (+) False zbtb18
TU262324 lncRNA upstream 195317 11786413 ~ 11791957 (+) True G193172
TU262300 lncRNA upstream 271424 11715216 ~ 11715850 (+) True G193161
TU262190 lncRNA upstream 403485 11582793 ~ 11583789 (+) False rtkn2a
TU262157 lncRNA upstream 568172 11394094 ~ 11419102 (+) True G193047
XR_005637131.1 lncRNA downstream 15927 12007635 ~ 12017653 (+) True LOC120548033
TU262393 lncRNA downstream 25114 12016822 ~ 12017129 (+) False LOC120548033
TU262489 lncRNA downstream 185877 12177585 ~ 12178477 (+) True G193295
TU262490 lncRNA downstream 187083 12178791 ~ 12180953 (+) True G193296
TU262594 lncRNA downstream 473889 12465597 ~ 12465813 (+) True G193373
XM_039784051.1 mRNA upstream 1326 11936325 ~ 11985948 (+) False LOC120548087
XM_039784048.1 mRNA upstream 1326 11956030 ~ 11985948 (+) False LOC120548087
XM_039784047.1 mRNA upstream 1326 11967642 ~ 11985948 (+) True LOC120548087
XM_039784049.1 mRNA upstream 1326 11967723 ~ 11985948 (+) False LOC120548087
XM_039782941.1 mRNA upstream 59841 11924094 ~ 11927433 (+) True LOC120547506
XM_039783906.1 mRNA downstream 93042 12084750 ~ 12104791 (+) False ifngr1l
XM_039783905.1 mRNA downstream 93044 12084752 ~ 12104791 (+) True ifngr1l
XM_039783437.1 mRNA downstream 115728 12107436 ~ 12113315 (+) True il22ra2
XM_039783438.1 mRNA downstream 150687 12142395 ~ 12175956 (+) True pcnx2
XM_039783439.1 mRNA downstream 150687 12142395 ~ 12175956 (+) False pcnx2
XR_005637161.1 other upstream 240572 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 618651 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 621670 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 835033 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 1030696 10953139 ~ 10956578 (+) False LOC120548129
XR_005637197.1 other downstream 255243 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other downstream 255243 12246951 ~ 12278375 (+) False oprm1
TU262524 other downstream 295338 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 295338 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 295338 12287046 ~ 12290232 (+) False sf3b5

Expression Profile