RNA id: XM_039784898.1


Basic Information

Item Value
RNA id XM_039784898.1
length 1643
RNA type mRNA
GC content 0.57
exon number 14
gene id LOC120548560
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12351323 ~ 12373271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTTCCACACTCACTAgtagcagcagaagcagcagcaggagccCTGTCTGTACTGGATCAGTGGAGATGGGCTGAGGCAAAGAGGACAGACCCAACAACACCGAGACCAACGGCCGTTGAGAGTAGCAGTTACAGAAGGGAACCCGGCAATTATTCCTGATCCCGCttgccccctctcctctcccggCCCCAGCAGGCCAGGGAATGTCCCGGCAGCAAGATGCCTTATGTGGACCGACAGAACCGTATCTGTGGCTTCCTGGACATAGAGGAGTTCGAAAGCAGTGGCAAGTTCCTGCGTCGTTACTTCATACTGGACACGCAGCAGGGAAGCTTGGTGTGGTTCATGGACAACCCACAGAACCTGCCTGTTGGTACAGACTGTGTTGGCTCCCTCAAGCTCACCTACATCTCTaagGTCAGCGATGCCACTAAGCTGAGGCCTAAGGCAGAATTTTGCTTCGTCATCAATGCTGGGATGAGGAAGTTCTTCCTGCAGGCCAACGATCAGCAGGACCTCGTAGACTGGGTCGATGCTCTCAATAAAGCCACCAAGATCACTGTGCCAAAGTTGTGTGATGGACACCAGAATGCAGAGAACCAGAAGGCTTTACCGGATCTAATAGGGCCCAAGAAACAAGTCTCCTATAAGACCGAGATCATTGGAGGAGTGCCCATCGTCactcagacacaaCACGATGGGGGTGATGGTGCAGACAGAGCAGAGCGTGAGGCCATGCATCGCTCTCACAGCCAGCTGCCGTACTTCCTGGGCAGGCCGACTCAGGAGCACGCCGCCATCAAGTCAGGCTACTGTGTCAAGCAAGGAGCTGTGATGAGGAACTGGAAACGGCGATATTTCCTACTGGAAGAAAACTCAATGAGTTACTTCAAGTCAGATTTGGAGAAAGAGCCCCTGAGAATGATCCCGCTGAAGGAAGTTCACAAAGTCCAGGAGTGCAAACAGAGTGACATCATGATGAGAGATAATCTGTTTGAAGTCGTCACCACATCAAGGACGTTTTACATACAGGCGGACAGCCCAGAGGAGATGCACAGCTGGATCAAGGCTGTCTCAGGGGCCATTGTGGCCCAGCGGGGGCCTGGGAGGTCTGCTGCCACAATGCGGCAGGCCAGACGGCTGTCGAACCCCTGTATACAGAGGTATACGTCTCGAATCGGGGAGTGCAGCAGCACTCTGCTGCAGCTGTGTACCTGTCTTAGATGTGTGACATCCTGcttgtctctcctcctccctcctgttcGCTGCCTGAACACGGCGCCCGTTCCACTTTCTACCGCAGCCCCGCGGGTCCCCCCGTCCCTCGCTCGCCCATATCTGCCATGCCACCATGCTACCCAGAGTGGGGGGCTGCTGTCACGTGCGGCACACGCTCGCAGCCTGGCATGGGACAGCGAGCACTTCATGAGCCTGCTGCCACGGCCCAGTCACAGCCACACGCCAGCACGCCTGTCCCTGCAGGAGACGCGCCTGGCAAAGTGACCTGCGAACCACCCGTGACCAACCTTACTAACTCTGAGGAGTCACCGTGGCGACGGCGGAGCAGCTTTGAGCCCCACATGCCTGAACCACCCCTGGACCTGGATGACGCTGACCTGCCAGTGAGCCAGGTCTGAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262490 lncRNA upstream 170371 12178791 ~ 12180953 (+) True G193296
TU262489 lncRNA upstream 172847 12177585 ~ 12178477 (+) True G193295
XR_005637131.1 lncRNA upstream 333671 12007635 ~ 12017653 (+) True LOC120548033
TU262393 lncRNA upstream 334195 12016822 ~ 12017129 (+) False LOC120548033
TU262381 lncRNA upstream 361109 11987274 ~ 11990215 (+) False G193213
TU262594 lncRNA downstream 94097 12465597 ~ 12465813 (+) True G193373
TU262615 lncRNA downstream 395768 12767268 ~ 12767474 (+) True G193392
TU262616 lncRNA downstream 472572 12844072 ~ 12844380 (+) True G193393
TU262619 lncRNA downstream 486300 12857800 ~ 12886083 (+) False G193395
TU262620 lncRNA downstream 486300 12857800 ~ 12932854 (+) True G193395
XM_039784785.1 mRNA upstream 60794 12287013 ~ 12290530 (+) True sf3b5
XM_039784784.1 mRNA upstream 61091 12287014 ~ 12290233 (+) False sf3b5
XM_039784922.1 mRNA upstream 72949 12246951 ~ 12278375 (+) False oprm1
XM_039784921.1 mRNA upstream 75693 12246951 ~ 12275631 (+) False oprm1
XM_039783439.1 mRNA upstream 175368 12142395 ~ 12175956 (+) False pcnx2
XM_039784905.1 mRNA downstream 5022 12376522 ~ 12402596 (+) True LOC120548561
XM_039784729.1 mRNA downstream 34425 12405925 ~ 12425164 (+) True wapla
XM_039784464.1 mRNA downstream 128027 12499527 ~ 12761144 (+) False grid1a
XM_039784461.1 mRNA downstream 128028 12499528 ~ 12761805 (+) True grid1a
XM_039784462.1 mRNA downstream 128030 12499530 ~ 12761805 (+) False grid1a
TU262524 other upstream 61092 12287046 ~ 12290232 (+) False sf3b5
TU262525 other upstream 61092 12287046 ~ 12290232 (+) False sf3b5
TU262526 other upstream 61092 12287046 ~ 12290232 (+) False sf3b5
XR_005637197.1 other upstream 72949 12246951 ~ 12278375 (+) True oprm1
TU263049 other downstream 1703142 14074642 ~ 14076457 (+) True G193730
TU263682 other downstream 3981691 16353191 ~ 16353831 (+) True G194185
TU263878 other downstream 4517900 16889400 ~ 16890950 (+) True G194325
XR_005637204.1 other downstream 6197483 18568983 ~ 18569123 (+) True LOC120548592
TU264570 other downstream 6309489 18680989 ~ 18682296 (+) False prdm8

Expression Profile